BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA02FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1557 912 0.0
>3x_Contig1557
Length = 10562
Score = 912 bits (460), Expect = 0.0
Identities = 509/520 (97%), Gaps = 4/520 (0%)
Strand = Plus / Plus
Query: 85 tgaaactaaaaagtgagaagaatagcggtgtggtcgagttttcatcggaagaattgaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgaaactaaaaagtgagaagaatagcggtgtggtcgagttttcatcggaagaattgaaaa 821
Query: 145 atagcgtgcaactgtcgaagactgcgaactacgatgctgctaccagcttacaggagaaac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atagcgtgcaactgtcgaagactgcgaactacgatgctgctaccagcttacaggagaaac 881
Query: 205 ttattgctaagaagatggcaatgagagatgaggaaaatgcagaagaattgtcgttgaaac 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ttattgctaagaagatggcaatgagagatgaggaaaatgcagaagaattgtcgttgaaac 941
Query: 265 ggaaaagtgaagatgttgactctgctgaaaaggaaacatccaatgaacctgaggatgatg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ggaaaagtgaagatgttgactctgctgaaaaggaaacatccaatgaacctgaggatgatg 1001
Query: 325 aggccgattatgatgaagacgaaggctctactgttccaccagcggtcatccacaccggta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 aggccgattatgatgaagacgaaggctctactgttccaccagcggtcatccacaccggta 1061
Query: 385 ttgtaaaatcagggttcattgacaccgatgagtcggttagactttacgaacctggatatc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ttgtaaaatcagggttcattgacaccgatgagtcggttagactttacgaacctggatatc 1121
Query: 445 atgatcgttactatcaacataaattccatgttccagcaaaagatattccagctctggcaa 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1122 atgatcgttactatcaacataaattccatgttccagcaaaagatattccagctctgcaaa 1181
Query: 505 aggatgtgattaggtgctatgtggaaggtatttcatggggtcttattattttattatcag 564
|||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 1182 aggatgtgattaggtgctatgtggaaggtatttcat-gggttttattatattattatca- 1239
Query: 565 gggatgcgcgtcatggaacttggtacttttccataccatt 604
|||||| ||||| ||| ||||||||| | |||||||||||
Sbjct: 1240 gggatgtgcgtcttgg-acttggtac-tatccataccatt 1277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9586
Number of Sequences: 1807
Number of extensions: 9586
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)