BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA02RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1161 955 0.0
>3x_Contig1161
Length = 5308
Score = 955 bits (482), Expect = 0.0
Identities = 495/498 (99%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 47 ctgaaaactgacgttttgaaactttcttgtttagtgacagagaaaataatttcaaaaggt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgaaaactgacgttttgaaactttcttgtttagtgacagagaaaataatttcaaaaggt 463
Query: 107 atgtatgggtagggaaccaagtttagcgttataatcgtttttaatgagcgtagtaaagtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atgtatgggtagggaaccaagtttagcgttataatcgtttttaatgagcgtagtaaagtt 403
Query: 167 aggttgttgttcgagggtgttcaatctttaattaatctgaaggaaaactatgtatattaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aggttgttgttcgagggtgttcaatctttaattaatctgaaggaaaactatgtatattaa 343
Query: 227 gaattcttcaatgacatgaaataaaggtgcaagtaaaaggtatgaaaatggtagtaaaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaattcttcaatgacatgaaataaaggtgcaagtaaaaggtatgaaaatggtagtaaaaa 283
Query: 287 agtgccatttgctgcccttcttatataatacaaatgttactttggacacgctaataaact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtgccatttgctgcccttcttatataatacaaatgttactttggacacgctaataaact 223
Query: 347 cttaacaccttataagtatttaccgttgatgaattaccaagttccagttaattagtatgg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cttaacaccttataagtatttaccgttgatgaattaccaagttccagttaattagtatgg 163
Query: 407 tattcttctgcttttttccctaaattttttttgtcgcattttatactgcatcgttgaaac 466
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 162 tattcttctgcttttttccctaaa-tttttttgtcgcattttatactgcatcgttgaaac 104
Query: 467 gcttcagtgaacgccgtaataaattaaagaaacggatacaaaccttgactgttcgcttct 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 103 gcttcagtgaacgccgtaataaattaaagaaacggatacaaaccttgactgttcgctact 44
Query: 527 ttcaagtgaatgtttttt 544
| ||||||||||||||||
Sbjct: 43 tacaagtgaatgtttttt 26
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,277
Number of Sequences: 1807
Number of extensions: 11277
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)