BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA03FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1549 985 0.0
>3x_Contig1549
Length = 13677
Score = 985 bits (497), Expect = 0.0
Identities = 518/524 (98%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 87 catatttgttttgccatttttatgctgtacgtacctattgatgtttttggacaaggcatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catatttgttttgccatttttatgctgtacgtacctattgatgtttttggacaaggcatt 636
Query: 147 gttaaattatgccgcatcgatggggatcaaggacaatttggttggtgatgagttttctaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gttaaattatgccgcatcgatggggatcaaggacaatttggttggtgatgagttttctaa 696
Query: 207 tttgggtactattttctctgcatcgtatatctttgcagaaccgtttgcggtgtatttgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tttgggtactattttctctgcatcgtatatctttgcagaaccgtttgcggtgtatttgct 756
Query: 267 ccaaaggtttcccgtgtctcgagtgttgggctcgttcatcatatgttggggtgtcgttgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ccaaaggtttcccgtgtctcgagtgttgggctcgttcatcatatgttggggtgtcgttgt 816
Query: 327 cgtttgtcattgtgtttgtaagacatatgcaagtttgatgattgtacgtgttctattagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 cgtttgtcattgtgtttgtaagacatatgcaagtttgatgattgtacgtgttctattagg 876
Query: 387 gttgttcgagtcgtgtagtgctgtangatgcattacagtcaacggtatgtattatacgaa 446
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 877 gttgttcgagtcgtgtagtgctgtaggatgcattacagtcaacggtatgtattatacgaa 936
Query: 447 atcggaacaaacgcaaagaattggttactgggctgctcaagcaggaaccggttatatcat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 atcggaacaaacgcaaagaattggttactgggctgctcaagcaggaaccggttatatcat 996
Query: 507 tggtggtttaatgtcatttgggtttttacattaccacggaactgaatttacctcgtggca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 tggtggtttaatgtcatttgggtttttacattaccacggaactgaatttacctcgtggca 1056
Query: 567 aatcatgttccttgttggccgttttaatgaccgggggattcggt 610
|||||||||||||||| | || |||| |||||| ||||||||||
Sbjct: 1057 aatcatgttccttgtt-gtcggtttagtgaccgtgggattcggt 1099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7088
Number of Sequences: 1807
Number of extensions: 7088
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)