BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA03RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1217 0.0
>3x_Contig1294
Length = 6938
Score = 1217 bits (614), Expect = 0.0
Identities = 658/670 (98%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 48 catcgatgatgatgactataagaggatgcatactgagaacatggttcgcaaatcctcaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 catcgatgatgatgactataagaggatgcatactgagaacatggttcgcaaatcctcaaa 1132
Query: 108 gtcaaaacaaattttgatttctagacctccaccattgttatctgttcacatcaaccggtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 gtcaaaacaaattttgatttctagacctccaccattgttatctgttcacatcaaccggtc 1192
Query: 168 cgtttttgaccctcgcacttatatgatcaggaaaaataactcaagatttatattcaaaag 227
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1193 cgtttttgaccctcgcacttatatgatcaggaaaaataactcaagagttatattcaaaag 1252
Query: 228 caaattgaatctatcaccttggtgttgcaattatgataagattaatcttgatgcacgtct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 caaattgaatctatcaccttggtgttgcaattatgataagattaatcttgatgcacgtct 1312
Query: 288 tccgatgtccaagaagcaagagaactggcacgaatcatccgaagatgacaataatggaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 tccgatgtccaagaagcaagagaactggcacgaatcatccgaagatgacaataatggaac 1372
Query: 348 tgaatactacaataagttgcatcgcagatttgaaaaagaatttgaagacagcgatgaaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 tgaatactacaataagttgcatcgcagatttgaaaaagaatttgaagacagcgatgaaga 1432
Query: 408 ggaggatggaagtgataatggtcaaggaatgttcaatggatcttcaagaatggtggaaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 ggaggatggaagtgataatggtcaaggaatgttcaatggatcttcaagaatggtggaaga 1492
Query: 468 gcatgatgttttgaatggtgaattaagttcggcatcgttgtcatcatccgaagacgatat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gcatgatgttttgaatggtgaattaagttcggcatcgttgtcatcatccgaagacgatat 1552
Query: 528 tgctgaagtcgaagaggtggagttagatgcccttggaaattcaatcgtaaaaaagactgc 587
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1553 tgctgaagtcgaagaggtggagttagatgcccttggaaatacaatcgtaaaaaagactgc 1612
Query: 588 caaaaaaccattattatgtggccaatcaagatgtgtttatctccagaggaaacctcgatt 647
|||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1613 caaaaaaccattattaggtgg-caatcaagatgtgtctatctccagaggaaacctcgata 1671
Query: 648 tagtagatgccgaaagccactttgagcaagaagatgatcctgaagatgattatgatggat 707
|||||||||||||| || ||| |||||||||||||||||||||||||||| |||| ||||
Sbjct: 1672 tagtagatgccgaaggcaactctgagcaagaagatgatcctgaagatgatgatga-ggat 1730
Query: 708 gaaccttatg 717
||| ||||||
Sbjct: 1731 gaagcttatg 1740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9274
Number of Sequences: 1807
Number of extensions: 9274
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)