BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA04FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 511 e-145
3x_Contig1167 361 2e-99
>3x_Contig985
Length = 5529
Score = 511 bits (258), Expect = e-145
Identities = 485/561 (86%)
Strand = Plus / Plus
Query: 87 atgcaagacttccgttgcaattcttggcacctgaacttcatttcaatgatgcaacagaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 atgcaagacttccgttgcaattcttggcacctgaacttcatttcaatgatgcaacagaag 5027
Query: 147 ccttcgaatttctaacggaacttgagctaatccagtttatggttgtgccggaaagcgacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5028 ccttcgaatttctaacggaacttgagctaatccagtttatggttgtgccggaaagcgacc 5087
Query: 207 ccaacgagatctattttgattgtaaaagctgccgttctacaatcattaaacatttcggcg 266
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 ccaacgagatctatctcgattgtaaaagctgccgttctacaatcattaaacatttcggcg 5147
Query: 267 atgctagaagaattgacatcaagggacaaatttaagttgtttcgaagaatatctcgtatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 atgctagaagaattgacatcaagggacaaatttaagttgtttcgaagaatatctcgtatg 5207
Query: 327 attcggctaaataccattcactactacatatgtttatattaatgacgttcaaaccatggt 386
||| ||||||||| ||| | || || |||||||||||||||||| ||| ||| |||||
Sbjct: 5208 attaggctaaataaaattaaataataaatatgtttatattaatgaagttaaaaaaatggt 5267
Query: 387 tcacatgaacctcggcagtttattaattgcaaagtcatattgatgctaatctagagatgg 446
| | ||| | || || |||||||||||| ||||| |||||||| |||| ||||||||
Sbjct: 5268 taaaatgcaactaggacgtttattaattgaaaagtactattgatgataataaagagatgg 5327
Query: 447 ccctagccctaacaatgagaactgcaatttcatagactcggaagcattaccgtgatacca 506
||| || |||| ||| || ||||| ||||| | ||||| |||| |||||| |
Sbjct: 5328 aaatagaaaaaaaaatgcgaaatgaaatttaatagaataggaagaattaaagtgataaaa 5387
Query: 507 ttcgaatctctgttttaccagtggttcagtcaataaatctgaatcgggactaattntacc 566
|| |||| | ||||||| ||||||| ||| ||||||| ||||| |||| ||||| ||
Sbjct: 5388 ttagaatatatgttttaaaagtggttaagtaaataaatatgaatagggaataattttaaa 5447
Query: 567 caagcatcttggtcctgttttactccttccatcaagttcgtatagtaagccgtccttttt 626
||| || ||||| ||||||| | || || ||||| |||||||||| || ||||
Sbjct: 5448 aaagaatattggtaatgttttaataattaaataaagttagtatagtaagaagtaatttta 5507
Query: 627 aatgaatgttatgaaatgtaa 647
||||||||||||||| |||||
Sbjct: 5508 aatgaatgttatgaactgtaa 5528
>3x_Contig1167
Length = 4801
Score = 361 bits (182), Expect = 2e-99
Identities = 263/288 (91%), Gaps = 2/288 (0%)
Strand = Plus / Plus
Query: 458 acaatgagaactgcaatttcatagactcggaagcattacc-gtgataccattcgaatctc 516
||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct: 150 acaatgagaactgcaatcccacagactcggaagcattacccgtgataccattcgaatctc 209
Query: 517 tgttttaccagtggttcagtcaataaatctgaatcgggactaattntacccaagcatctt 576
||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 210 tgtcttaccagtggttcagtcaataaatcttaatcgggactaattttacccaattatctt 269
Query: 577 ggtcctgttttactccttccatcaagttcgtatagtaagccgtcctttttaatgaatgtt 636
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 270 ggtcctgttttactccttccatcaagttcgtatagtaagccgtccttttcaatgaatgtt 329
Query: 637 atgaaatgtaacttaacattctcttttgcagaaagagcagcaatatcacctttgctgact 696
||||||||||||| ||||| ||||| ||||||| |||||||| ||||||| |||||||||
Sbjct: 330 atgaaatgtaactcaacatcctcttctgcagaaggagcagcagtatcacc-ttgctgact 388
Query: 697 atnttcgttatattattcgctaattggatccaagaagttattgactgc 744
|| |||||||||| |||||||||| ||||||||| || ||||||
Sbjct: 389 attttcgttatatatctcgctaattgataccaagaagtcatcgactgc 436
Score = 232 bits (117), Expect = 1e-60
Identities = 123/125 (98%)
Strand = Plus / Plus
Query: 317 atctcgtatgattcggctaaataccattcactactacatatgtttatattaatgacgttc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 atctcgtatgattcggctaaataccattcactactacatatgtttatattaatgacgttc 66
Query: 377 aaaccatggttcacatgaacctcggcagtttattaattgcaaagtcatattgatgctaat 436
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 aaaccatggttcacatgaacctcggcagtttattaattgttaagtcatattgatgctaat 126
Query: 437 ctaga 441
|||||
Sbjct: 127 ctaga 131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7180
Number of Sequences: 1807
Number of extensions: 7180
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)