BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA04RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1099 1279 0.0
>3x_Contig1099
Length = 3902
Score = 1279 bits (645), Expect = 0.0
Identities = 743/771 (96%), Gaps = 5/771 (0%)
Strand = Plus / Plus
Query: 53 tatataggataattgaccgtcaaatcgttactttctgcaagtatatgagtaccaatattc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 tatataggataattgaccgtcaaatcgttactttctgcaagtatatgagtaccaatattc 1593
Query: 113 tttcagtgcaaggcagtaccgttttaagtatgctttgagcaaacgctgcttgcttatgtt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 tttcagtgcaaggcagtaccgttttaagtatgctttgagcaaacgctgcttgcttatgtt 1653
Query: 173 cacttcaccagtaaatatgtgtcctagatcatctaagacgaatgttgatttcttaatatc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 cacttcaccagtaaatatgtgtcctagatcatctaagacgaatgttgatttcttaatatc 1713
Query: 233 gatttcatcaaaatacttagctaaccatataatggtattcactgtttacgattcactcat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 gatttcatcaaaatacttagctaaccatataatggtattcactgtttacgattcactcat 1773
Query: 293 cgtggatatgttaaaagctggtataaaattgagcaggcggtgcatagaagggaatccgaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 cgtggatatgttaaaagctggtataaaattgagcaggcggtgcatagaagggaatccgaa 1833
Query: 353 ctgcgaacttcggcaataaaacgagatggacgttgacttcaaccgttcccaggaaactca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 ctgcgaacttcggcaataaaacgagatggacgttgacttcaaccgttcccaggaaactca 1893
Query: 413 cctgaagttcggacaaatcttgaaggaatatcaggcaagagtgttgagcgatgaagcgtc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 cctgaagttcggacaaatcttgaaggaatatcaggcaagagtgttgagcgatgaagcgtc 1953
Query: 473 tcttgacccgttctctatagtgcaagacttcaggtccattgccggagaagaggcattgtg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 tcttgacccgttctctatagtgcaagacttcaggtccattgccggagaagaggcattgga 2013
Query: 533 aattgcagaatctggagaggagaatgataatgaacagtttcagaactgggaactagaggc 592
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2014 aattgcagaatctggagaggagaatgataatgaacagttccagaactgggaactagaggc 2073
Query: 593 caagttttgggatcttgttggcttgttagtggaatatcgaacatcanagacagttgacaa 652
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2074 caagttttgggatcttgttggcttgttagtggaatatcgaacatcagagacagttgacaa 2133
Query: 653 agatatttacgttcattcataccattcgaacgtagtatttccaaaacagttgttggcatt 712
||||||| |||||||||||||| |||||||||||||||| | ||||||||||||| ||
Sbjct: 2134 agatattaacgttcattcatacaattcgaacgtagtattccaaaaacagttgttgcaatc 2193
Query: 713 aaataaggggatattatgaaatctgggtaattaagtcattgctttgaagcttacatttgg 772
||||||||||||| |||||||||||| |||| ||||||| || |||| ||| ||||| |
Sbjct: 2194 aaataaggggata-tatgaaatctggttaataaagtcatggc-ttgaggctaacatt--g 2249
Query: 773 ccttcccaaaaagaccatcttagtttatgtcctccaaaatggtctagttcc 823
| ||||| | |||||||| |||||||||| || |||||||||| ||||||
Sbjct: 2250 gcatcccagagagaccatc-tagtttatgtactacaaaatggtcgagttcc 2299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6185
Number of Sequences: 1807
Number of extensions: 6185
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)