BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZA05RM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1630                                                        1015   0.0  

>3x_Contig1630 
          Length = 14771

 Score = 1015 bits (512), Expect = 0.0
 Identities = 587/608 (96%), Gaps = 3/608 (0%)
 Strand = Plus / Minus

                                                                         
Query: 21    gcttcgttactctt-acaaacactattattttagcgtttctcgaagcactgctcttgatg 79
             |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10379 gcttcgttactcttcacaaacactaatattttagcgtttctcgaagcactgctcttgatg 10320

                                                                         
Query: 80    tcgtgtattattcttagtaagagtagtggcttgaacagactcttagcagtaggaatattg 139
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10319 tcgtgtattattcttagtaagagtagtggcttgaacagactcttagcagtaggaatattg 10260

                                                                         
Query: 140   acattgagttcttgcaatttcttaggtattgaatataatttaacagaatctgtgaggaag 199
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259 acattgagttcttgcaatttcttaggtattgaatataatttaacagaatctgtgaggaag 10200

                                                                         
Query: 200   atcttggggttgtggagatacaaattgtacaacttttctgcattcgtagtcaaagtagca 259
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10199 atcttggggttgtggagatacaaattgtacaacttttctgcattcgtagtcaaagtagca 10140

                                                                         
Query: 260   gaaaagaccattttgattacgtttcctggacgtttatcctgcttatcgtttgtcaaatgg 319
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10139 gaaaagaccattttgattacgtttcctggacgtttatcctgcttatcgtttgtcaaatgg 10080

                                                                         
Query: 320   tggaaaagcacttggttccaattttggaatgactgatttaatagtctgtctgcttcattc 379
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 10079 tggaaaagcacttggttccaattttggaatgactgatttaatagtcggtctgcttca-tc 10021

                                                                         
Query: 380   aatgactaagaacttcaaagtttttaggtcaaatgattccatctgcaagtgatcgaccag 439
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10020 aaggactaagaacttcaaagtttttaggtcaaatgattccatctgcaagtgatcgaccag 9961

                                                                         
Query: 440   tctgtccggagtgatgattagaatgtctggagagttatacataaatttgttgtgttcttt 499
             |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 9960  tctgcccggagtgatgattagaatgtctggagagttatacaaaaatttgttgtgttcttc 9901

                                                                         
Query: 500   ttttaaggagttctttagcttcgacatttgatacattgagactggccccttgacttattt 559
             ||| ||||||||||  || ||||||| |||||||||||||||||| ||||||||||| ||
Sbjct: 9900  tttcaaggagttctcgagtttcgaca-ttgatacattgagactggtcccttgacttagtt 9842

                                                                         
Query: 560   tacagagacaatcgtatacttgatgaattaaaattttagttggaacccaaatttatgccc 619
             || ||||||||||||| ||||||||||||||||||||||| |||||| |||||  |||||
Sbjct: 9841  tagagagacaatcgtagacttgatgaattaaaattttagtaggaaccaaaattattgccc 9782

                     
Query: 620   taacttta 627
             ||||||||
Sbjct: 9781  taacttta 9774


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,797
Number of Sequences: 1807
Number of extensions: 10797
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)