BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA06FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1067 0.0
>3x_Contig1442
Length = 8270
Score = 1067 bits (538), Expect = 0.0
Identities = 629/653 (96%), Gaps = 6/653 (0%)
Strand = Plus / Minus
Query: 87 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 5179
Query: 147 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 5119
Query: 207 aaaaaaacaccttatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 266
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 5059
Query: 267 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 4999
Query: 327 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 4939
Query: 387 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 4879
Query: 447 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 4819
Query: 507 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 4759
Query: 567 ggattgttgtagcttttggtgggtttttgctggttgcggttgatgatgattggtggtgat 626
||||||||||||||| || |||||||| | ||||||||||||||||| ||||||||||
Sbjct: 4758 ggattgttgtagcttctgttgggtttt--gttgttgcggttgatgatga-tggtggtgat 4702
Query: 627 gatgggtattttgatgttctggatccgtgtttaatttaaaaccgtttttggta-gcgttt 685
|||||||||| ||||||||||||||||||| | ||| | || ||| | ||||| ||||||
Sbjct: 4701 gatgggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgttt 4642
Query: 686 gaactcctgtacattttccagtgggtgtttggtggagtttgatttttgacacc 738
|||||||||||| |||||||| ||||||| || |||||||||| ||||||||
Sbjct: 4641 gaactcctgtactatttccagt-ggtgttt-gttgagtttgattcttgacacc 4591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7682
Number of Sequences: 1807
Number of extensions: 7682
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)