BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZA06RM1.SCF screened BAC_end (924 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1227 1189 0.0 >3x_Contig1227 Length = 6330 Score = 1189 bits (600), Expect = 0.0 Identities = 669/687 (97%), Gaps = 4/687 (0%) Strand = Plus / Minus Query: 49 gcgttgaacttcgtcggattagttgggaatcgtgatgaaatctttgctgataatctaagt 108 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 6135 gcgttgaacttcgtcggaatagttgggaatcgtgatgaaatctttgctgataatctaagt 6076 Query: 109 gagacgatattcggaattcttagatctcctgtctcatcagccattttgaaaagaaaagca 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6075 gagacgatattcggaattcttagatctcctgtctcatcagccattttgaaaagaaaagca 6016 Query: 169 tgcttggcgtttttaactttaattcgttataaaccgcaaatccttacttattttgaagat 228 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 6015 tgcttggcgtttttaactttaattcgttataaaccgcaaatccttacaaatcttgaagat 5956 Query: 229 aataaacgaactctatggattgaaagaattactacattattaggggatgagaacgatcat 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5955 aataaacgaactctatggattgaaagaattactacattattaggggatgagaacgatcat 5896 Query: 289 ggattattactttcacttttgcctttacttgagtttatagctagagagattgacgttaat 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5895 ggattattactttcacttttgcctttacttgagtttatagctagagagattgacgttaat 5836 Query: 349 ccatgtttgaggttaatcccgcaactagctgagattttgcatgaatgtctatcgaaaaag 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5835 ccatgtttgaggttaatcccgcaactagctgagattttgcatgaatgtctatcgaaaaag 5776 Query: 409 cagaatagtgcaaatgatgcagattaccaattttcgggagtatctaacccatggattgta 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5775 cagaatagtgcaaatgatgcagattaccaattttcgggagtatctaacccatggattgta 5716 Query: 469 gggaattgtgtatctcttttacaagtcttggtcagcgataacggagagaatttgatcgga 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5715 gggaattgtgtatctcttttacaagtcttggtcagcgataacggagagaatttgatcgga 5656 Query: 529 tcgaatattgatcaacagaccctgngtaagttacgggtttgtgtattacatgcggtatcg 588 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 5655 tcgaatattgatcaacagaccctgggtaagttacgggtttgtgtatcacatgcggtatcg 5596 Query: 589 tttgcattagcaagtgatgcccatccggtcacc-aaaatgctcagtattttggtatgttt 647 ||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||| Sbjct: 5595 tttgcattagcaagtgatgccaatccggtcaccaaaaatgctcagtattctgttatgttt 5536 Query: 648 acaatgctcggttttgcttgtaacctgattcct-cttatgaggct-tttcaaattccgtc 705 ||||||||||||||||||||||| ||| |||| || |||||||| |||||||||||||| Sbjct: 5535 acaatgctcggttttgcttgtaaactggatcctactaatgaggctatttcaaattccgtc 5476 Query: 706 acaggacttttgggaactaatgacatc 732 ||||||| |||| |||||||||||||| Sbjct: 5475 acaggac-tttgtgaactaatgacatc 5450 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8217 Number of Sequences: 1807 Number of extensions: 8217 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 924 length of database: 10,358,551 effective HSP length: 16 effective length of query: 908 effective length of database: 10,329,639 effective search space: 9379312212 effective search space used: 9379312212 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)