BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA07FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1059 0.0
>3x_Contig1744
Length = 24119
Score = 1059 bits (534), Expect = 0.0
Identities = 593/610 (97%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 86 ctctcttttcagcaactctttgagctcttctttctctagcagctctgttcttagatcttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13070 ctctcttttcagcaactctttgagctcttctttctctagcagctctgttcttagatcttc 13011
Query: 146 tagcttcagcttcttccttcaaagccttttcacgttgagcatcagccttagcttggatga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13010 tagcttcagcttcttccttcaaagccttttcacgttgagcatcagccttagcttggatga 12951
Query: 206 tgtgttcaaccaaagctctcttgtgcttgaaggtgttacccttagcagacttgtacaaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12950 tgtgttcaaccaaagctctcttgtgcttgaaggtgttacccttagcagacttgtacaaag 12891
Query: 266 agtggtacaagtgtctgtcgatcttaccagcgtctctgtacttggccaacaatcttctca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12890 agtggtacaagtgtctgtcgatcttaccagcgtctctgtacttggccaacaatcttctca 12831
Query: 326 agacacgtaatcttctgatccagacaacttgggatggcaatctagcttccttggtaccct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12830 agacacgtaatcttctgatccagacaacttgggatggcaatctagcttccttggtaccct 12771
Query: 386 ttctcttaccgtaaccagtgtgacgaccgtttctcttggattcagccatagctctagttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12770 ttctcttaccgtaaccagtgtgacgaccgtttctcttggattcagccatagctctagttc 12711
Query: 446 tggatctagagtggattctagttggcttcttaacgatggtaccgttcttgaccaactttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12710 tggatctagagtggattctagttggcttcttaacgatggtaccgttcttgaccaactttc 12651
Query: 506 tgatggcatttttggagttggcttgagcgatttcggcggtttcagaaggatccatccaga 565
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12650 tgatggcatttctggagttggcttgagcgatttcggcggtttcagaaggatccatccaga 12591
Query: 566 tctttctcttaccaacaccggcaacagaagcgggaagttttttttgagttcttaagttag 625
||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||
Sbjct: 12590 tctttctcttaccaacaccggcaacagaagcggcaagtctcttttgagttctcaagttag 12531
Query: 626 ccctgcaagttatatggaccattgattatgtttccatattcattgtttttattttctgtt 685
|||||||||| ||| ||||| |||| ||||||| ||| || |||||| | ||||||||
Sbjct: 12530 ccctgcaagtaataatgaccaatgataatgtttcattat-cagtgtttt-agtttctgtt 12473
Query: 686 agtatttttg 695
||||| ||||
Sbjct: 12472 agtatatttg 12463
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7907
Number of Sequences: 1807
Number of extensions: 7907
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)