BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA07RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1027 0.0
>3x_Contig1468
Length = 9852
Score = 1027 bits (518), Expect = 0.0
Identities = 620/647 (95%), Gaps = 8/647 (1%)
Strand = Plus / Minus
Query: 48 atgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagttgtag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 atgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagttgtag 1551
Query: 108 tcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttttgtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 tcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttttgtt 1491
Query: 168 caggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgcgacc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 caggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgcgacc 1431
Query: 228 cgccaaatagcgaagagctacttcctgctgctcctacggagccaaagccaccaaatgttg 287
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1430 cgccaaatagcgaagagctacttcctgc--cttctacggagccaaagccaccaaatgttg 1373
Query: 288 gttttgctgcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggcagcat 347
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 gttttg--gcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggcagcat 1315
Query: 348 cgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagttgtat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 cgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagttgtat 1255
Query: 408 tagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgttgtg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 tagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgttgtg 1195
Query: 468 tattcataccaaagcctccgaatgcaggtttttgtttgtccattgtcattggtagtggtc 527
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1194 tattcataccaaagcctccgaatgcagg-ttttgtttgtccattgtcattggtagtggtc 1136
Query: 528 gcttcaaacgctggaaaagcattttccttgctgcgtattanagctaccaccagctgaacc 587
||| ||||||||| ||| ||| ||||| |||||||||||| |||||||| ||||||||||
Sbjct: 1135 gctccaaacgctgaaaatgca-tttccctgctgcgtattagagctaccagcagctgaacc 1077
Query: 588 gaaactttgcaaagcattgccactggtctggccttcatttttgccaaaaagagaggaagc 647
||||||| |||||||||||||||||||||||| || | |||||||| |||||||||||
Sbjct: 1076 gaaacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaagc 1017
Query: 648 acctgggcctgaactggtgtttccctgtggga-atacattttgtcct 693
||||| || | |||||||||| ||||||| | ||||||||||||||
Sbjct: 1016 acctgtgctggtactggtgttt-cctgtggtagatacattttgtcct 971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7000
Number of Sequences: 1807
Number of extensions: 7000
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)