BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA08FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig146 133 7e-31
>3x_Contig146
Length = 1181
Score = 133 bits (67), Expect = 7e-31
Identities = 121/131 (92%), Gaps = 6/131 (4%)
Strand = Plus / Plus
Query: 87 tacgtgtcgagtgcatctgtgtcgataggtttgttgtatttcttgattctctgcatcaat 146
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1033 tacgtgtcgagtgcatctgtgtcgataggcttgttgtatttcttgattctctg-atcaat 1091
Query: 147 atcttcaaatctctgaacaacgcagagaaataagtatgtatgattatgccgacaaacttg 206
|||||| |||||||| ||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 1092 atcttc-aatctctg-acaacgc-gagaaataagtatgcttgattatg-cggcaaacttg 1147
Query: 207 tatcttgatga 217
||||||||||
Sbjct: 1148 -atcttgatga 1157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7341
Number of Sequences: 1807
Number of extensions: 7341
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)