BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZA08RM1.SCF screened BAC_end (948 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1472 1086 0.0 >3x_Contig1472 Length = 10822 Score = 1086 bits (548), Expect = 0.0 Identities = 668/700 (95%), Gaps = 6/700 (0%) Strand = Plus / Plus Query: 55 aacattttcgccaatcccaaagagtaaatcctgtcacatgtcacgaaagtatgtggtatt 114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 aacattttcgccaatcccaaagagtaaatcctgtcacatgtcacgaaagtatgtggtatt 346 Query: 115 gaaatctttagttagggtggagtatggttagatctacagacatctctatgtagttatata 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 gaaatctttagttagggtggagtatggttagatctacagacatctctatgtagttatata 406 Query: 175 catattctatgacaataggaaggctccggaaccttcattcattgcttgtgcaatacgatc 234 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 407 catattctatgacaataggaaggctccggaaccttcagtcattgcttgtgcaatacgatc 466 Query: 235 tttgagtaccagtttatcagagtattttggtagtttcaagtaattggcgcatgtcataac 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 tttgagtaccagtttatcagagtattttggtagtttcaagtaattggcgcatgtcataac 526 Query: 295 gctaggtaggcaatggtctgccgagatgttcccatctgggtgcttcaggactactgtgaa 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 gctaggtaggcaatggtctgccgagatgttcccatctgggtgcttcaggactactgtgaa 586 Query: 355 tttgggttttaagtttttgaaaccgccaagaggtagtttcggagagccagtgatgaattg 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 tttgggttttaagtttttgaaaccgccaagaggtagtttcggagagccagtgatgaattg 646 Query: 415 taagaacaaacgtttctgttgtgtcgaaaaattcgacaaaatatctatgaggtctgttat 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 taagaacaaacgtttctgttgtgtcgaaaaattcgacaaaatatctatgaggtctgttat 706 Query: 475 gattggagaatccatcgagtagccatggtctgcatgaatggatgagtattgcggtttgca 534 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 707 gattggagaatccatcgagtagccatggtctgcatgaatggatgagtatagc-gtttgca 765 Query: 535 caaaccaatctttagcaactgcacccaacaaatcggatagttcttgtcggagttaagaat 594 || ||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct: 766 cagaccaatcttcagcaactgcaccaaacaaatcggatagttc-tgtcggagttaagatt 824 Query: 595 accaatgatgaattaggggaatgatttcgaaaatccgttcctgaa-gcaacgagctgc-t 652 | |||||||||| || ||||||||||||||||||||||||||||| ||| |||||||| | Sbjct: 825 agcaatgatgaa-taagggaatgatttcgaaaatccgttcctgaaggcagcgagctgcat 883 Query: 653 attttcgcctttgccc-aaaattggtcaaagacaccaattaagtctttttctcatttgaa 711 || | ||||||||||| |||||||||||||||||| ||| |||| | ||| ||||| Sbjct: 884 atctacgcctttgcccaaaaattggtcaaagacacgaatcaagtactcttccacgttgaa 943 Query: 712 agaattacctaagattttcaaacccccttccaccaattct 751 ||| | | ||||||||||| |||| ||||||| ||||||| Sbjct: 944 agattcaactaagattttcgaaccaccttccaacaattct 983 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8569 Number of Sequences: 1807 Number of extensions: 8569 Number of successful extensions: 75 Number of sequences better than 1.0e-20: 1 length of query: 948 length of database: 10,358,551 effective HSP length: 16 effective length of query: 932 effective length of database: 10,329,639 effective search space: 9627223548 effective search space used: 9627223548 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)