BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZA09FM1.SCF screened BAC_end
         (931 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1803                                                        1170   0.0  

>3x_Contig1803 
          Length = 52241

 Score = 1170 bits (590), Expect = 0.0
 Identities = 700/733 (95%), Gaps = 4/733 (0%)
 Strand = Plus / Minus

                                                                         
Query: 88    tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32707 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 32648

                                                                         
Query: 148   tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32647 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 32588

                                                                         
Query: 208   ttagaagattagatgaatgtgcagcaatgatccgtaccaagggtgaagctggtactggtg 267
             |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32587 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 32528

                                                                         
Query: 268   atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32527 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 32468

                                                                         
Query: 328   atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32467 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 32408

                                                                         
Query: 388   atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32407 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 32348

                                                                         
Query: 448   gtggtgttgccactcctgccgatgccgctttattaatgcaatt--gggttgtgaaggtgt 505
             |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 32347 gtggtgttgccactcctgccgatgccgctttattaatgcaattgcgggttgtgaaggtgt 32288

                                                                         
Query: 506   atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32287 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 32228

                                                                         
Query: 566   ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32227 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 32168

                                                                         
Query: 626   tgacctaatgggtggattgtcaatagaatccttgtagaactccgaaaaccctagaaggtt 685
             |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 32167 tgacctaatgggtggattgtcaatagaatccttgaagaactccgaaaaccctaaaaggtt 32108

                                                                         
Query: 686   ggccaccatctgctggttgttaccaaacattatacggggataggcttttttacctactcc 745
             ||| | |||| |||||| ||||| ||||| ||||| | ||||||  ||||||| || || 
Sbjct: 32107 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 32048

                                                                         
Query: 746   agttaagacgatcactcgttttttttgtttttataacggttgctttgttaacaacttatt 805
             ||| ||||||| ||   |||| | ||| ||||||||  | |||||||||||||||||| |
Sbjct: 32047 agtaaagacgaacaaaagtttatattgattttataa-tgctgctttgttaacaactta-t 31990

                          
Query: 806   catacaagagagt 818
             || ||||||||||
Sbjct: 31989 caaacaagagagt 31977


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7035
Number of Sequences: 1807
Number of extensions: 7035
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)