BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZA09FM1.SCF screened BAC_end (931 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1803 1170 0.0 >3x_Contig1803 Length = 52241 Score = 1170 bits (590), Expect = 0.0 Identities = 700/733 (95%), Gaps = 4/733 (0%) Strand = Plus / Minus Query: 88 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32707 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 32648 Query: 148 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32647 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 32588 Query: 208 ttagaagattagatgaatgtgcagcaatgatccgtaccaagggtgaagctggtactggtg 267 |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 32587 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 32528 Query: 268 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32527 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 32468 Query: 328 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32467 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 32408 Query: 388 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32407 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 32348 Query: 448 gtggtgttgccactcctgccgatgccgctttattaatgcaatt--gggttgtgaaggtgt 505 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32347 gtggtgttgccactcctgccgatgccgctttattaatgcaattgcgggttgtgaaggtgt 32288 Query: 506 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32287 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 32228 Query: 566 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32227 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 32168 Query: 626 tgacctaatgggtggattgtcaatagaatccttgtagaactccgaaaaccctagaaggtt 685 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 32167 tgacctaatgggtggattgtcaatagaatccttgaagaactccgaaaaccctaaaaggtt 32108 Query: 686 ggccaccatctgctggttgttaccaaacattatacggggataggcttttttacctactcc 745 ||| | |||| |||||| ||||| ||||| ||||| | |||||| ||||||| || || Sbjct: 32107 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 32048 Query: 746 agttaagacgatcactcgttttttttgtttttataacggttgctttgttaacaacttatt 805 ||| ||||||| || |||| | ||| |||||||| | |||||||||||||||||| | Sbjct: 32047 agtaaagacgaacaaaagtttatattgattttataa-tgctgctttgttaacaactta-t 31990 Query: 806 catacaagagagt 818 || |||||||||| Sbjct: 31989 caaacaagagagt 31977 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7035 Number of Sequences: 1807 Number of extensions: 7035 Number of successful extensions: 57 Number of sequences better than 1.0e-20: 1 length of query: 931 length of database: 10,358,551 effective HSP length: 16 effective length of query: 915 effective length of database: 10,329,639 effective search space: 9451619685 effective search space used: 9451619685 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)