BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA09RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1261 0.0
>3x_Contig1515
Length = 8855
Score = 1261 bits (636), Expect = 0.0
Identities = 701/716 (97%), Gaps = 5/716 (0%)
Strand = Plus / Minus
Query: 53 agaagatatcc-acaatgggcgaaagatttgaaagttgacaaagtgatgaggcgaaatag 111
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 agaagatatcccacaatgggcgaaagatttgaaagttgacaaagtgatgaggcgaaatag 3724
Query: 112 tgtcaatggtggtaaattgccggatccgtttggaataaagaaactagagatcgaaggaca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 tgtcaatggtggtaaattgccggatccgtttggaataaagaaactagagatcgaaggaca 3664
Query: 172 gaagccccctaaggtgatagatcatgacgctcatatatcgtatagccaaactcactgcag 231
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 3663 gaagccccctaaggtgatagatcatgacgctcaaa-atcgtatagccaaactcactgcag 3605
Query: 232 aacgggcatggcagatatcttctgagcctctcaaatctgttcccatgaatataattatgt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604 aacgggcatggcagatatcttctgagcctctcaaatctgttcccatgaatataattatgt 3545
Query: 292 catatatgtctggtaacagcttgcaaattattcctataatgactgctgtgatgttggtct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3544 catatatgtctggtaacagcttgcaaattattcctataatgactgctgtgatgttggtct 3485
Query: 352 caaatcccatcaaaagtatcttaggagttaagtcaaaatttcaacatttaatcaacaaag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3484 caaatcccatcaaaagtatcttaggagttaagtcaaaatttcaacatttaatcaacaaag 3425
Query: 412 ataatgatgtaaccccgcctgtagttgcagccatgattatgtacgtgatataccaattaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3424 ataatgatgtaaccccgcctgtagttgcagccatgattatgtacgtgatataccaattaa 3365
Query: 472 tcctcatgggaataggtttgcataagttgaattcaatgggattgttcccaactacgtcaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3364 tcctcatgggaataggtttgcataagttgaattcaatgggattgttcccaactacgtcaa 3305
Query: 532 gtgattggcttgcttggcaacaaccaacggagtatttataccgtacgttaagtatttaat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 gtgattggcttgcttggcaacaaccaacggagtatttataccgtacgttaagtatttaat 3245
Query: 592 tgaatgtagcgaaatt-atacattatacaaaaaggtctatttgctagtattgcttttggt 650
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 3244 tgaatgtagcgaaattaatacattatacaaaagggtctatttgctagtattgctttgggt 3185
Query: 651 agaagccggggcagactctgcagtagttgggagagtttc-ttatttttatgcttcatttc 709
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct: 3184 agaagccggggcagactctgcagtagtaggagtagtttctttatttttatgcttcatttc 3125
Query: 710 gaacaattcctgaacgttattttttcttgttatcagtccgataatctttatttaca 765
||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||
Sbjct: 3124 gaacaattcctgaacgtta-tatttcttgtaatcagtccgataatctttatctaca 3070
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7856
Number of Sequences: 1807
Number of extensions: 7856
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)