BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA12FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1596 1211 0.0
>3x_Contig1596
Length = 11686
Score = 1211 bits (611), Expect = 0.0
Identities = 718/743 (96%), Gaps = 8/743 (1%)
Strand = Plus / Plus
Query: 91 actataccagtacttgagcttaggagtaagctgaataaggaactaggtatacttgcttag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 actataccagtacttgagcttaggagtaagctgaataaggaactaggtatacttgcttag 557
Query: 151 ccttttaaaaaaaaaaagcgtgatagagaagaacctcttagcacagtttccggcttgctt 210
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccttttaaaaaaaaaaagcgtgaaagagaagaacctcttagcacagtttccggcttgctt 617
Query: 211 aatatgttttctaatggcaaacaacagggaaacaaggcaggcgatgcagctgggggagcg 270
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatatgtcttcgaacggcaaacaacagggaaacaaggcaggcgatgcagctgggggagcg 677
Query: 271 tcaggagccacggctcccggtgcaggcggaagtagtggcaatggaaatagtagtgcggcc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaggagccacggctcccggtgcaggcggaagtagtggcaatggaaatagtagtgcggcc 737
Query: 331 ggaaatgctagcgctaatgccaatgctggcggtagcggtgccagtgggaatgcaccggca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaaatgctagcgctaatgccaatgctggcggtagcggtgccagtgggaatgcaccggca 797
Query: 391 gcttctaaaccggggttttcagcgtcagatttgaaccgcatcgttttggaatatttgaat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcttctaaaccggggttttcagcgtcagatttgaaccgcatcgttttggaatatttgaat 857
Query: 451 aagaaggggtatcacagaacggaacagatgcttcgtgctgaatcgtcacgtactttgacg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aagaaggggtatcacagaacggaacagatgcttcgtgctgaatcgtcacgtactttgacg 917
Query: 511 cctccaaataaaaacgctgctgcttctaacacaatccctgccttgtctgcatcagccact 570
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 918 cctccaaataaaaacgctgctgcttctaacacaatccctgcctcgtctgcatcagccact 977
Query: 571 gcgattacaggaagtactaccactgcaaaaccctgttt-aaatccttcgatgcccttgaa 629
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 978 gcgattacaggaagtactaccactgcaaaa-cctgtttcaaatccttcgatgcccttgaa 1036
Query: 630 aagagat-acaacgggcaattgataaaaccgccacaggtgacacccttgcactattttag 688
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1037 aagagataacaacggccaattgataaaaccgcaacaggtgacacccttgcactattttag 1096
Query: 689 agcttacttaatgttgaaaaattggatcgattcgtctttagaattggtacaaccttgagc 748
|||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct: 1097 agcttactcaatgttgaaaaattggatcgattcgtctttagaatt-gtacaaacctgagc 1155
Query: 749 tatcacgtttcttatcccccgattttaatttacgtttttttaccggtgggcaatcaaggg 808
|||||||| || ||| ||||||||| |||||||||||||||| | ||| | ||||| ||
Sbjct: 1156 tatcacgtatcatat-acccgattttcatttacgtttttttacagttggtc-atcaa-gg 1212
Query: 809 accccttacaagccgagaagatt 831
|||||||||||| ||||||||||
Sbjct: 1213 accccttacaag-cgagaagatt 1234
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,159
Number of Sequences: 1807
Number of extensions: 10159
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)