BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZA12RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1057 0.0
>3x_Contig1711
Length = 15491
Score = 1057 bits (533), Expect = 0.0
Identities = 553/560 (98%)
Strand = Plus / Plus
Query: 49 aacgaatgcaccagtattatcatacctagtgctttattcagcatgaaatatacataaatg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 aacgaatgcaccagtattatcatacctagtgctttattcagcatgaaatatacataaatg 9552
Query: 109 tacgtatatatatgaatacactcactattcatcattaataattagaatagaagaatcttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 tacgtatatatatgaatacactcactattcatcattaataattagaatagaagaatcttt 9612
Query: 169 catcctattttcgttaatacatagtttaaagccaacttccaaaagatcacaggcctcaat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 catcctattttcgttaatacatagtttaaagccaacttccaaaagatcacaggcctcaat 9672
Query: 229 ggtcacaaagaaaggctgtgacataattatacacatgtgatcttgctgctcgtgtcacct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 ggtcacaaagaaaggctgtgacataattatacacatgtgatcttgctgctcgtgtcacct 9732
Query: 289 ttattcgagatactattcgaaaccttgtttttctgttcctgattcgtcagcctctctgtc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 ttattcgagatactattcgaaaccttgtttttctgttcctgattcgtcagcctctctgtc 9792
Query: 349 tttgcagaaggaaagcaagccatgataaatatccgaaaaagaataaaaagtcagaacaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 tttgcagaaggaaagcaagccatgataaatatccgaaaaagaataaaaagtcagaacaaa 9852
Query: 409 gaatcaaacacttttcaaagaaggtacactctgcaaagatcttttggtcaattgcaggtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9853 gaatcaaacacttttcaaagaaggtacactctgcaaagatcttttggtcaattgcaggtg 9912
Query: 469 atactgatttattttntgtactcatattggcacggttatgtccatacggtatacaatcaa 528
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9913 atactgatttattttttgtactcatattggcacggttatgtccatacgtaatacaatcaa 9972
Query: 529 tagaatcattattagaagaaacatgtctgattcgattaggcactacgattatttagttta 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9973 tagaatcattattagaagaaacatgtctgattcgattaggcactacgattatctagttat 10032
Query: 589 tgggggtggttctgggggtg 608
||||||||||||||| ||||
Sbjct: 10033 tgggggtggttctggtggtg 10052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6687
Number of Sequences: 1807
Number of extensions: 6687
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)