BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB01FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1120 0.0
>3x_Contig1744
Length = 24119
Score = 1120 bits (565), Expect = 0.0
Identities = 672/692 (97%), Gaps = 13/692 (1%)
Strand = Plus / Plus
Query: 87 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15921 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 15980
Query: 147 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15981 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 16040
Query: 207 tttcgccttatattgaccatatagttctagttcacttggatgtacaccaagttcattggc 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16041 tttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttcattggc 16100
Query: 267 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16101 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 16160
Query: 327 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16161 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 16220
Query: 387 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16221 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 16280
Query: 447 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16281 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 16340
Query: 507 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacatcaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16341 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacatcaat 16400
Query: 567 gacgatagcatcttgcttttaccagttttggtttgaccatgtttggcacaccacaagcag 626
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 16401 gacgatagcatcttgctttaaccag-tttggtttgaccatgtttggcacaccacaagcag 16459
Query: 627 ctatgactacatgggcattttttacaccatcggcaatgtttctcagtgtattttatggca 686
|||||||||||| ||||||||||||| ||||||||||| ||||||||||| | |||||||
Sbjct: 16460 ctatgactacatcggcattttttacaacatcggcaatg-ttctcagtgta-tctatggca 16517
Query: 687 caattgggactgtttgcattttaaattcctttaaacaatgattgcaacgggaggttccca 746
||||| ||||| |||||||| || |||||| |||||||| |||||||||| |||||||
Sbjct: 16518 -aattgtgactg-ttgcattt--aaatccttt-aacaatga-tgcaacggga-gttccca 16570
Query: 747 caaatgtcagatctttccaatatacaacagcg 778
| ||||||||||| |||||||| |||||||||
Sbjct: 16571 c-aatgtcagatc-ttccaata-acaacagcg 16599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5969
Number of Sequences: 1807
Number of extensions: 5969
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)