BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1213 0.0
>3x_Contig1529
Length = 11812
Score = 1213 bits (612), Expect = 0.0
Identities = 700/720 (97%), Gaps = 7/720 (0%)
Strand = Plus / Minus
Query: 86 atcatcaaatggtaaattgtcatatggaagttcaatttcgggaacaaaagccaagaatgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11282 atcatcaaatggtaaattgtcatatggaagttcaatttcgggaacaaaagccaagaatgg 11223
Query: 146 ctttgccaaatcaatcaaacggactgtaacaaaaaaataaatattaatttattttagaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11222 ctttgccaaatcaatcaaacggactgtaacaaaaaaataaatattaatttattttagaaa 11163
Query: 206 tgttgttagtaactgttatagcatacgagaatagttccttgactaaaatgtaccttgcag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11162 tgttgttagtaactgttatagcatacgagaatagttccttgactaaaatgtaccttgcag 11103
Query: 266 taccttcaaccgataatttcaggtaccgaaaaagagaatgaacctaaaggcaagttaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11102 taccttcaaccgataatttcaggtaccgaaaaagagaatgaacctaaaggcaagttaatg 11043
Query: 326 ggaaatattccagagtttaaccacatgtaacatacaacctgccatttggtggatagctga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11042 ggaaatattccagagtttaaccacatgtaacatacaacctgccatttggtggatagctga 10983
Query: 386 aaataaaatgaaagattagagcccttggtagtctttcaatcagctataaatctgggtccc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10982 aaataaaatgaaagattagagcccttggtagtctttcaatcagctataaatctgggtccc 10923
Query: 446 gaaagtgtacatttgttgaacttacagatatttgttcaattgcaatcgtttttaatcttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10922 gaaagtgtacatttgttgaacttacagatatttgttcaattgcaatcgtttttaatcttt 10863
Query: 506 ccatgatatcgcctttcgaacaaacaatttttttcatactggtgctgccttttcaaggta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10862 ccatgatatcgcctttcgaacaaacaatttttttcatactggtgctgccttttcaaggta 10803
Query: 566 ctcagtcgtttgttacgaaactcacgtgatcaccctaatattacgtgagttataggagga 625
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10802 ctcagtcgtttgttacgaaactcacgtgatcaccctaatatcacgtgagttataggagga 10743
Query: 626 aaggtattcagtggttatacagcaaataccaaacgttgaacgaataacaactggttagcc 685
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10742 aaggtatccagtggttatacagcaaatacgaaacgttgaacgaataacaactggttagcc 10683
Query: 686 taataatgcctgaaagttttgggttcaattgaactattgaataaggcattaggaatgtcc 745
|| ||||| ||| ||||||| ||||||||||||||| ||||| |||| |||| ||||||
Sbjct: 10682 tagtaatg-ctgtaagtttttggttcaattgaactagtgaat-aggccatagg-atgtcc 10626
Query: 746 taaataaatccctggcttccttttctgccttttttcccttggcaggaaataccaaataat 805
|| || ||||||| ||||||||| ||||| ||||||||| ||||||||| |||||||||
Sbjct: 10625 tatat-aatccct-gcttcctttcctgcc-tttttccctctgcaggaaat-ccaaataat 10570
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,445
Number of Sequences: 1807
Number of extensions: 10445
Number of successful extensions: 234
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)