BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB02RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1172 0.0
>3x_Contig1779
Length = 24855
Score = 1172 bits (591), Expect = 0.0
Identities = 628/639 (98%), Gaps = 1/639 (0%)
Strand = Plus / Minus
Query: 51 ttctttgcctgttcccatttcgttaaatcggataaatcaatcatgaacactaaaagatcg 110
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8687 ttctttgcctgttcccaattcgttaaatcggataaatcaatcatgaacactaaaagatcg 8628
Query: 111 acttgttggaaacatcgatcccagagtttttgaaagcgggtttggccggctaaatcgtat 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8627 acttgttggaaacatcgatcccagagtttttgaaagcgggtttggccggctaaatcgtat 8568
Query: 171 acctttagattggtatggttcggcagctttacatctttgatgtttacttttaaagttggt 230
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8567 acctttagattggtatggttcggcagctttacatctttgatgtttactcctaaagttggt 8508
Query: 231 atcgtgtcgaccacaaactcctctccagctatcagattggtgaaagtcgttttacctgag 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8507 atcgtgtcgaccacaaactcctctccagctatcagattggtgaaagtcgttttacctgag 8448
Query: 291 ttttgcaaaccaacaactgcaatgctcaattgtttctgagtgctcgcagtataaagccaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8447 ttttgcaaaccaacaactgcaatgctcaattgtttctgagtgctcgcagtataaagccaa 8388
Query: 351 tcccaaaattgattgaaccatttccagaagcaatccatacctactcaacagctcgagcta 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8387 tcccaaaattgattgaaccatttccagaagcaatccatacctactcaacagctcgagcta 8328
Query: 411 tgaccgtttggtctgtttttccttctactttctcttggaattgtagcattgcgatgtatc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8327 tgaccgtttggtctgtttttccttctactttctcttggaattgtagcattgcgatgtatc 8268
Query: 471 agttgtttaaatgtcaacaataatagtgaccctaaacttctatagaaaaaccggctggaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8267 agttgtttaaatgtcaacaataatagtgaccctaaacttctatagaaaaaccggctggaa 8208
Query: 531 gggcaaaaacagaacaagggagaatagctgccgaaatgtatcttgtgctacataaacgct 590
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 8207 gggcaaaaacagaacaagggagaatagctgccgaattgtatcttgtgctacattaacgct 8148
Query: 591 tgtacggtattacatctacattatcaaattgcagtgaaagccgtatatataattggatat 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8147 ggtacggtattacatctacattatcaaattgcagtgaaagccgtatatataattgtatat 8088
Query: 651 attgattttatctacaatttaaagggttctttggtatgc 689
|| || |||||||||||||||| | ||||||||||||||
Sbjct: 8087 ataga-tttatctacaatttaatgtgttctttggtatgc 8050
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7503
Number of Sequences: 1807
Number of extensions: 7503
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)