BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB03FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1405 1231 0.0
>3x_Contig1405
Length = 9155
Score = 1231 bits (621), Expect = 0.0
Identities = 710/733 (96%), Gaps = 5/733 (0%)
Strand = Plus / Plus
Query: 93 atgcttcgaagagagagtcttgaaggggaaatcacaggaaagtatcatggcttcagttat 152
||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||
Sbjct: 384 atgcttcgaagagagaggcgggaaggggaaagcacaggaaagtatcatggcgtcagttat 443
Query: 153 tcttgtcggatgtcggagagcagaggtcgggagatctttcaaggaaatcttatccttgac 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttgtcggatgtcggagagcagaggtcgggagatctttcaaggaaatcttatccttgac 503
Query: 213 taacgtgctgaagaaggaaatcgggaagacgtttaccatcatcaagaacattctaagaga 272
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taacgtgcggaagaaggaaatcgggaagacgtttaccatcatcaagaacattctaagaga 563
Query: 273 aaagaatgatagagggtttgccaatattgatacttcaaatatcaccacaggacagacaag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagaatgatagagggtttgccaatattgatacttcaaatatcaccacaggacagacaag 623
Query: 333 tgcagagactttcatccctagattttgttctcatttgggcctttcagtgcaggtggctaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcagagactttcatccctagattttgttctcatttgggcctttcagtgcaggtggctaa 683
Query: 393 tgctgcagagtacatcgcgaaacactctaaggatgtcaatgtcttggctggtagatctcc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgctgcagagtacatcgcgaaacactctaaggatgtcaatgtcttggctggtagatctcc 743
Query: 453 tatcaccatcgcagcagcagctatctatatggcaactctactattcaaattgaatatcag 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatcaccatcgcagcagcagctatctatatggcaactctactattcaaattgaatatcag 803
Query: 513 tcctacaagaatctctcagactttacaagtcacagaaggtaccgtgaaaggtggatacaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcctacaagaatctctcagactttacaagtcacagaaggtaccgtgaaaggtggatacaa 863
Query: 573 agcattatacgaacacaaagaaaaagtggtcgacccacaactgatagaatctggtgtcgt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agcattatacgaacacaaagaaaaagtggtcgacccacaactgatagaatctggtgtcgt 923
Query: 633 gaaatgggacacccttcctagagtcagtaatgacaaaagtgagaaggctaattgattaat 692
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 924 gaaat-ggacaaccttcctagagtcagtaatgacaaaagtgagaaggctaattgattatt 982
Query: 693 aacaatacccattacaaaaaccc-aaaaaaaaaggattttaatactatctttaaaaaaaa 751
||||||||||||||||||||||| |||||||||| || ||||||||| | ||||||||||
Sbjct: 983 aacaatacccattacaaaaacccaaaaaaaaaagaatattaatactaacattaaaaaaaa 1042
Query: 752 attcaagaaaggaaaccctttgtttgggaagaataccccagtttccaaatttgaaattga 811
| |||||||| |||| || || |||||||||||| ||||||||||||||||| ||||||
Sbjct: 1043 a-tcaagaaaagaaaaccattagttgggaagaata-cccagtttccaaatttg-aattga 1099
Query: 812 atttcctataaaa 824
|| ||||||||||
Sbjct: 1100 atatcctataaaa 1112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9675
Number of Sequences: 1807
Number of extensions: 9675
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)