BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB03RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1170 0.0
>3x_Contig1648
Length = 16375
Score = 1170 bits (590), Expect = 0.0
Identities = 685/709 (96%), Gaps = 6/709 (0%)
Strand = Plus / Minus
Query: 44 gctttgcggagtccattccggttcttcctgtatcatatcatatagtttatgcaaaaactt 103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7209 gctttgcggagtccattccggtacttcctgtatcatatcatatagtttatgcaaaaactt 7150
Query: 104 ctccacccttacgatgtgtgagtccttcaacttcacttgttccaataactcatcgatttg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7149 ctccacccttacgatgtgtgagtccttcaacttcacttgttccaataactcatcgatttg 7090
Query: 164 taatttgaaaatgttcgatttgaagagttcagccgtttctctcgctatttgtatattctg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7089 taatttgaaaatgttcgatttgaagagttcagccgtttctctcgctatttgtatatcctg 7030
Query: 224 ggagctcaactttggcttcttagccttatggtcatgtgtgttttcctcttcctcgtcttc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7029 ggagctcaactttggcttcttagccttatggtcatgtgtgttttcctcttcctcgtcttc 6970
Query: 284 ttccccgctggaagaggcagtagcctcttcctctctttcttcttcttcttctccagaaga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6969 ttccccgctggaagaggcagtagcctcttcctctctttcttcttcttcttctccagaaga 6910
Query: 344 agaagaaccagtcttgtcactgtcattttcagcctgtgagccagtaatagcttttacaag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6909 agaagaaccagtcttgtcactgtcattttcagcctgtgagccagtaatagcttttacaag 6850
Query: 404 cgccttcttggtgaaactaccattcctggacttctcaccatctggtgctacacgtttcac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6849 cgccttcttggtgaaactaccattcctggacttctcaccatctggtgctacacgtttcac 6790
Query: 464 agaggccatagttcactaaatatccacttaattcactagttcctgaccgtttgcgcctct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6789 agaggccatagttcactaaatatccacttaattcactagttcctgaccgtttgcgcctct 6730
Query: 524 ggattga-tataatacagaatgatagccagtgcccgagtcctagggtttcaatttcccct 582
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6729 ggattgattataatacagaatgatagccagtgcccgagtcctagggtttcaatttcccct 6670
Query: 583 agccaaaaacag-agaggattacccttttaatatctagcanactaatacgagggaaattc 641
|||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 6669 agcc-aaaacagaagagaattacccttttaatatctagcaaactaatacgagggaaatcc 6611
Query: 642 caac-aaatcactgtgaataacctgcctttgggtacgttcattttattgtaaa-gcggaa 699
||| |||||||||||| ||||||||| |||||||||||||| || |||||| ||| |
Sbjct: 6610 aaacaaaatcactgtgataaacctgcctatgggtacgttcattcta-tgtaaatgcgaat 6552
Query: 700 tttttaaaccttttaagctcattgccttgccaatttttcccaaattcga 748
| ||||||||||| |||||||| |||| || ||||||||| ||||||||
Sbjct: 6551 tctttaaacctttaaagctcatcgcctggcaaatttttccaaaattcga 6503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9295
Number of Sequences: 1807
Number of extensions: 9295
Number of successful extensions: 316
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)