BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZB04FM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1763                                                        1156   0.0  

>3x_Contig1763 
          Length = 22654

 Score = 1156 bits (583), Expect = 0.0
 Identities = 634/647 (97%), Gaps = 3/647 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   ttagatcctaagacggttagctatattttcccagtggcaagacatatcgggttctgtgcc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9243 ttagatcctaagacggttagctatattttcccagtggcaagacatatcgggttctgtgcc 9184

                                                                        
Query: 146  acaggaccggttccagatgccagaaatattgcattgagatgtaaagccgaagctagtgag 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9183 acaggaccggttccagatgccagaaatattgcattgagatgtaaagccgaagctagtgag 9124

                                                                        
Query: 206  tttcgttataaatatgggtatgatatcccatgctccgtactagctaaaagaatggccaat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9123 tttcgttataaatatgggtatgatatcccatgctccgtactagctaaaagaatggccaat 9064

                                                                        
Query: 266  ttgtcgcaaatatacacacaaagagcttacatgagaccattagggattattttgactttt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9063 ttgtcgcaaatatacacacaaagagcttacatgagaccattagggattattttgactttt 9004

                                                                        
Query: 326  atttcgtacgatgaggaaacaggacctgctattttcaaatgtgaccctgctggttactat 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9003 atttcgtacgatgaggaaacaggacctgctattttcaaatgtgaccctgctggttactat 8944

                                                                        
Query: 386  acggggtacaaggctactgccactggcccaaaacagcaggagttgaactctgctttggag 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8943 acggggtacaaggctactgccactggcccaaaacagcaggagttgaactctgctttggag 8884

                                                                        
Query: 446  aagcatttcaagaagttaaaggacgataaaatcgatgaggaaagttgggaaaaaaccgtt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8883 aagcatttcaagaagttaaaggacgataaaatcgatgaggaaagttgggaaaaaaccgtt 8824

                                                                        
Query: 506  gagttcggtatcactacccttattgactcattaggaacagatttcagcaaaaatgatcta 565
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8823 gagttcggtatcactaccctaattgactcattaggaacagatttcagcaaaaatgatcta 8764

                                                                        
Query: 566  gaagttggtgtagcgattaaggattaattctttacgcttacagctgatgaanattgagg- 624
            |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| 
Sbjct: 8763 gaagttggtgtagcgattaaggataaattctttacgctaacagctgatgaa-attgagga 8705

                                                                        
Query: 625  aagattggtctctattgctgaacaggattaaggtangaaaatttctttccccctcatata 684
            |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 8704 aagattggtctctattgctgaacaagattaaggta-gaaaatttctttccccctcatata 8646

                                                           
Query: 685  aatatataattcaaaacattttactttattgtagttcccacatcaaa 731
            |||||||||||||||||| | |   ||||||||||||| ||||||||
Sbjct: 8645 aatatataattcaaaacaatatcacttattgtagttccaacatcaaa 8599


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7620
Number of Sequences: 1807
Number of extensions: 7620
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)