BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB04RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 1334 0.0
>3x_Contig1059
Length = 3822
Score = 1334 bits (673), Expect = 0.0
Identities = 785/812 (96%), Gaps = 8/812 (0%)
Strand = Plus / Plus
Query: 40 aacacgcttgcttacggccccatctttctttgaactccttggaacgagcggtaccaatta 99
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2795 aacaagcttgcttacggccccatctttctctgaactccttggaacgagcggtaccaatta 2854
Query: 100 atgtaccaccttcactgagccatccacggacgtccttccattccatttttctcaaatagt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2855 atgtaccaccttcactgagccatccacggacgtccttccattccatttttctcaaatagt 2914
Query: 160 ctccacctttcaccaaaccttcataaccttcgtaaactgcataaacgtcacatccataat 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2915 ctccacctttcaccaaaccttcataaccttcgtaaactgcataaacgtcacatccataat 2974
Query: 220 atatactggatctaaccactgcacggacagcggcattcataccttgagaatcaccaccag 279
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975 agatactggatctaaccactgcacggacagcggcattcataccttgagaatcaccaccag 3034
Query: 280 atgtcatcacggcaattttctttttcttggaatccttatccactaattctacagtgatct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3035 atgtcatcacggcaattttctttttcttggaatccttatccactaattctacagtgatct 3094
Query: 340 tttgttctactgaagaatccttaggtgcgatgaactctgaagcgtttaattccttaccat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3095 tttgttctactgaagaatccttaggtgcgatgaactctgaagcgtttaattccttaccat 3154
Query: 400 catgggaatcagtgacaagaaccacgttacccaaaggatccactaatttgacgttatgat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 catgggaatcagtgacaagaaccacgttacccaaaggatccactaatttgacgttatgat 3214
Query: 460 catcaactctttcaccaatcttggatacttcatccaaactgacggtgtaatacacaactg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 catcaactctttcaccaatcttggatacttcatccaaactgacggtgtaatacacaactg 3274
Query: 520 tatcggcagtttgatttaggggttcagtgtccactaacctcaacttgatcataacaccat 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3275 tatcggcagtttgatttaggggttcagtgtccactaacctcaacttgatcataacaccat 3334
Query: 580 cagtttgtagctgattagaagcctnctgttgtggaactcttgaacc-tgtgaatcaagtt 638
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 3335 cagtttgtagctgattagaagcctcctgttgtggaactctgaaaccttgtgaatcaagtt 3394
Query: 639 cagacaacttgaacgattccaaccaacattccttaacagagttcttggaagta-caacga 697
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3395 cagacaacttgaacgattccaaccaacattccttaacagagttcttggaagtaccaacga 3454
Query: 698 ttcaattcgaatcgtcatggttcttaaaattattg-acagttttaccgtttggaaaccc- 755
| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 3455 tcaaattcgaatcgtcatggttcttaaaattatcgtacagttttaccgtttggaaaccca 3514
Query: 756 aagaatggtagaa-ctcgtaacttccttttacag-ttttcatta-cggtactc-atggac 811
||||||||||||| |||||| ||||||| ||||| ||||||| | |||||||| ||| ||
Sbjct: 3515 aagaatggtagaatctcgtagcttccttatacagcttttcatcaccggtactcaatgaac 3574
Query: 812 agaaagcacccccctaaaccgagtaattcatg 843
||||||| | || || ||||||| |||||||
Sbjct: 3575 ggaaagcaacgccgtagaccgagttattcatg 3606
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6694
Number of Sequences: 1807
Number of extensions: 6694
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)