BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1479 1187 0.0
>3x_Contig1479
Length = 7316
Score = 1187 bits (599), Expect = 0.0
Identities = 647/659 (98%), Gaps = 3/659 (0%)
Strand = Plus / Minus
Query: 86 gctgttgttagcatttcttttgttacctaccactctttgccatagttgacaagaatcaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3925 gctgttgttagcatttcttttgttacctaccactctttgccatagttgacaagaatcaat 3866
Query: 146 cagaaaaacaacaacaacaacaacaacagtctaagagaccacgtcgaataaatgccatta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3865 cagaaaaacaacaacaacaacaacaacagtctaagagaccacgtcgaataaatgccatta 3806
Query: 206 ttatcctttcatcccaaccctcattaatgtcaaatcaaaaaaagatgaaacaccttttta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3805 ttatcctttcatcccaaccctcattaatgtcaaatcaaaaaaagatgaaacaccttttta 3746
Query: 266 ttttttgtgtttatgtatgtctctgtgttgatcgaaggaaagaaggatcattttgcactt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3745 ttttttgtgtttatgtatgtctctgtgttgatcgaaggaaagaaggatcattttgcactt 3686
Query: 326 ctttgaaagatgttccaaccattgttttaggttttacctcatacattcaaacatgttata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3685 ctttgaaagatgttccaaccattgttttaggttttacctcatacattcaaacatgttata 3626
Query: 386 aagttggaatataccatgaattcaatcgaatatatcacgaactatgagaaaatccaaacg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3625 aagttggaatataccatgaattcaatcgaatatatcacgaactatgagaaaatccaaacg 3566
Query: 446 gtatgaaaacaaatttgatcttttatcagaatgctgatactcactatcagttaataatcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3565 gtatgaaaacaaatttgatcttttatcagaatgctgatactcactatcagttaataatcc 3506
Query: 506 tctttttttttcttttacctatttctgttcttatcgacagtcattttgtcctcatatttg 565
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3505 tcttttttttccttttacctatttctgttcttatcgacagtcattttgtcctcatatttg 3446
Query: 566 ccttgctgatatgcccaataggtttttggctgcatgtaagttgacgttcataacagagca 625
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3445 ccttgctgatatgcccaatagg-ttttggctgcatgtaagttgacgttcataacagagca 3387
Query: 626 ctgggtaagataatgtagatccataaaagacgtttcatctgaaaatgtaaactatagtaa 685
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 3386 ctggtaaagataatgtagatccataaaagacgttccatctgaatatgtaaactatagtaa 3327
Query: 686 aattaaatttaactcttgtaaaatttaaggttggaggt-tgacctggccacccacgtcg 743
||||||||| ||||||||||| |||||| ||| ||||| ||||||||||||| ||||||
Sbjct: 3326 aattaaattaaactcttgtaagatttaa-gtttgaggtatgacctggccaccaacgtcg 3269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,307
Number of Sequences: 1807
Number of extensions: 11307
Number of successful extensions: 552
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)