BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB05RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1073 1308 0.0
>3x_Contig1073
Length = 3973
Score = 1308 bits (660), Expect = 0.0
Identities = 697/708 (98%), Gaps = 1/708 (0%)
Strand = Plus / Plus
Query: 52 acattgcccgcaacacaattaaatattagcagagaccagaccaatggtattaccgctaag 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 acattgcccgcaacacaattaaatattagcagagaccagaccaatggtattaccgctaag 1746
Query: 112 cctgttgctgggttgcaacaatcattaggcagtttgcctatcttcaatcatttgcctgta 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 cctgttgctgggttgcaacaatcattaggcagtttgcctatcttcaatcatttgcctgta 1806
Query: 172 aactctaagattggtgttgatgatctcacccgtatgaagatggcattgttaagtggaata 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 aactctaagattggtgttgatgatctcacccgtatgaagatggcattgttaagtggaata 1866
Query: 232 gacgaagaagttaaatttgcattgaaaagatatttacggtatagcattaacgcttcttat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 gacgaagaagttaaatttgcattgaaaagatatttacggtatagcattaacgcttcttat 1926
Query: 292 gttatcaaattgaatgagaatttggatttgttgcccattattatgcccttgattacagca 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1927 gttatcaaattgaatgagaatttggatttgttgcccattattatgcccttgattacagca 1986
Query: 352 tgcagagaatacattccacagcttgttggcccaatttccaatcaggcttttgaagcccta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 tgcagagaatacattccacagcttgttggcccaatttccaatcaggcttttgaagcccta 2046
Query: 412 caaaaaggttcaattacaatgcttcttttgagaaatttggcacaggactcggaaaacact 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 caaaaaggttcaattacaatgcttcttttgagaaatttggcacaggactcggaaaacact 2106
Query: 472 tcgatattagccaccgatatggaattgaaatcgttcatattgttcgtgttggagtgggca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2107 tcgatattagccaccgatatggaattgaaatcgttcatattgttcgtgttggagtgggca 2166
Query: 532 aatacgttcaattcgaaggattcggcaatctatcagtcacatacatccagtttcaacgaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 aatacgttcaattcgaaggattcggcaatctatcagtcacatacatccagtttcaacgaa 2226
Query: 592 ttggtaatctatactcttgatttaatggaggcgatttcatcttatattgcaccaggcaaa 651
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2227 ttgttaatctatactcttgatttaatggaggcgatttcatcttatattgcaccagcaaaa 2286
Query: 652 aaagacgatctatatttcc-aaacctctgtttgatttttcgtgatacaaaggatagatcc 710
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct: 2287 aaagacgatctatatttccaaaacctctgtttgatatttcgtgatacaaaggatagatac 2346
Query: 711 tgcgtgatctaaattttgaaatcattatttaaacttttggtgagatct 758
|||||||||| |||||||| |||||||| || ||| ||||||||||||
Sbjct: 2347 tgcgtgatctcaattttgagatcattatctagactcttggtgagatct 2394
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7713
Number of Sequences: 1807
Number of extensions: 7713
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)