BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZB06FM1.SCF screened BAC_end
         (908 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1337                                                        1292   0.0  

>3x_Contig1337 
          Length = 7771

 Score = 1292 bits (652), Expect = 0.0
 Identities = 730/752 (97%), Gaps = 3/752 (0%)
 Strand = Plus / Plus

                                                                        
Query: 82   aaacggtaggcgagttgtcattatcattatcatcatcatcatcctgcaaaggatccatat 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 aaacggtaggcgagttgtcattatcattatcatcatcatcatcctgcaaaggatccatat 2773

                                                                        
Query: 142  gtaaattaaaatcttatctgggtataacgtgtgtaatataattttttttcttcacaaata 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2774 gtaaattaaaatcttatctgggtataacgtgtgtaatataattttttttcttcacaaata 2833

                                                                        
Query: 202  ggccattcgggcttctgttgatcaatgtattagagcaataccaagatgtcgaagacatct 261
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 ggccattcgggcatctgttgatcaatgtattagagcaataccaagatgtcgaagacatct 2893

                                                                        
Query: 262  tggtattgttgttacatatatgacaaaccacgtgactttctgtcacgtgcttcccatccc 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 tggtattgttgttacatatatgacaaaccacgtgactttctgtcacgtgcttcccatccc 2953

                                                                        
Query: 322  cacgtgacactaaattttcttctttttttcctctgccgtccaatgaaatcgccgtgcgta 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 cacgtgacactaaattttcttctttttttcctctgccgtccaatgaaatcgccgtgcgta 3013

                                                                        
Query: 382  atgctgacgttaccagccacacagaaacacaggttttcaaaggcacgggaaaccgtggga 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 atgctgacgttaccagccacacagaaacacaggttttcaaaggcacgggaaaccgtggga 3073

                                                                        
Query: 442  ctactcaccgttatataacggatttcaaattgatttggaatttaaacttttactactatg 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 ctactcaccgttatataacggatttcaaattgatttggaatttaaacttttactactatg 3133

                                                                        
Query: 502  ccccagcggcgctatttgccaagccgtaatctttttcatttttttcccaattcattgtaa 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ccccagcggcgctatttgccaagccgtaatctttttcatttttttcccaattcattgtaa 3193

                                                                        
Query: 562  atatatatatattactatacaaagtttatataaagcttgtacgttttattcactttttta 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 atatatatatattactatacaaagtttatataaagcttgtacgttttattcactttttta 3253

                                                                        
Query: 622  t-agcacttcttcgcagttttctgtatttagtttttagaagaacattattggaaacagtg 680
            | |||||||||||||||||||||||||||||||||||||  |||| ||||||||  ||||
Sbjct: 3254 taagcacttcttcgcagttttctgtatttagtttttagagaaacaatattggaacaagtg 3313

                                                                        
Query: 681  tcagacacattgcttgagctgttggttggtttttgtttgcactcgccatatctattttga 740
            ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  |
Sbjct: 3314 tcagacacattgcttgagctgttggttggtttttgtttgcactcgcagtatctatttgaa 3373

                                                                        
Query: 741  ttttcatgaacgttttt-aaagaaaa-aaagttgaggggatttttttagaaatgaaaccc 798
            || ||||  |||||||| |||||||| |||||||||| |||||||| |||| ||||||| 
Sbjct: 3374 ttctcatagacgtttttcaaagaaaataaagttgaggtgattttttgagaagtgaaacca 3433

                                            
Query: 799  agggaacaaacctggaataaatgggaaacaaa 830
            |||||||||||||||||||| |||| ||||||
Sbjct: 3434 agggaacaaacctggaataagtggggaacaaa 3465


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,963
Number of Sequences: 1807
Number of extensions: 12963
Number of successful extensions: 321
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)