BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZB06RM1.SCF screened BAC_end
         (904 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig185                                                          999   0.0  

>3x_Contig185 
          Length = 1072

 Score =  999 bits (504), Expect = 0.0
 Identities = 504/504 (100%)
 Strand = Plus / Plus

                                                                       
Query: 48  taagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactccgtg 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  taagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactccgtg 156

                                                                       
Query: 108 cgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgagttcg 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgagttcg 216

                                                                       
Query: 168 aactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaactccg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaactccg 276

                                                                       
Query: 228 taggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaaaaca 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaaaaca 336

                                                                       
Query: 288 gcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataattct 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataattct 396

                                                                       
Query: 348 cggtatgtatttcattttttttttgatcattcatttttttccttcattgtttacgttatt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cggtatgtatttcattttttttttgatcattcatttttttccttcattgtttacgttatt 456

                                                                       
Query: 408 ttgactgaggaaaacaactggctcaaaaatgagtgacaagatcattcaaattcgttagta 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgactgaggaaaacaactggctcaaaaatgagtgacaagatcattcaaattcgttagta 516

                                                                       
Query: 468 gtggtgataggtttcagtttattgttttgtaaaaaagagacttgtttcaattgaatataa 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtggtgataggtttcagtttattgttttgtaaaaaagagacttgtttcaattgaatataa 576

                                   
Query: 528 aagggggcctgtaatttctttaaa 551
           ||||||||||||||||||||||||
Sbjct: 577 aagggggcctgtaatttctttaaa 600


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,340
Number of Sequences: 1807
Number of extensions: 14340
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)