BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB07RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1076 1213 0.0
>3x_Contig1076
Length = 4245
Score = 1213 bits (612), Expect = 0.0
Identities = 706/727 (97%), Gaps = 8/727 (1%)
Strand = Plus / Plus
Query: 48 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3350 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 3409
Query: 108 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 3469
Query: 168 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatagcatccgctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3470 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatagcatccgctc 3529
Query: 228 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 3589
Query: 288 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3590 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 3649
Query: 348 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 3709
Query: 408 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3710 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 3769
Query: 468 gttttgtatcggggtacagctttgcacaagtaattaaagcgcaaaagtacagcgaactgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3770 gttttgtatcggggtacagctttgcacaagtaattaaagcgcaaaagtacagcgaactgg 3829
Query: 528 tagcgattccaacaattgcaaatgccactacggagagggcanaacatgggatc-gatccc 586
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 3830 tagcgattccaacaattgcaaatgccactacggagagggcaaaacat-ggatcggatccc 3888
Query: 587 aactggaaaacacaagataggtattaatagctgggaacgaaaccaatgaaag-aagccaa 645
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct: 3889 aactggaaaacacaagataggtataaatagctgggaacgaaaccaatgaaggaaagccaa 3948
Query: 646 ctttatatcacagggcccgtgagaatccggataatatacttattattgaaggagttcaaa 705
||| ||||||||||| |||||||||| |||||||||||| || || || ||||| |||||
Sbjct: 3949 cttaatatcacaggg-ccgtgagaat-cggataatatacctaataatggaggag-tcaaa 4005
Query: 706 ttagctcctaaatttcctgcagcattaaagtaaattaacgtccagtggaagagtttcctt 765
| |||||||||||| ||||||||| ||||||||||||||||| ||| ||||||| ||||
Sbjct: 4006 taagctcctaaattccctgcagca-taaagtaaattaacgtcaagt-gaagagtatccta 4063
Query: 766 accttaa 772
|||||||
Sbjct: 4064 accttaa 4070
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6372
Number of Sequences: 1807
Number of extensions: 6372
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)