BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB08RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1271 0.0
>3x_Contig1581
Length = 11429
Score = 1271 bits (641), Expect = 0.0
Identities = 727/749 (97%), Gaps = 5/749 (0%)
Strand = Plus / Minus
Query: 46 cgatgtgaaaaactcgggtaaaactacagcattattatgagaatgactatgcatcgaaat 105
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 cgatgtgaaaaactcggg-aaaactacagcattattatgagaatgactatgcatcgaaat 10917
Query: 106 tacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10916 tacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcac 10857
Query: 166 aaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10856 aaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctg 10797
Query: 226 tacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10796 tacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttat 10737
Query: 286 aaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10736 aaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcc 10677
Query: 346 aggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10676 aggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaac 10617
Query: 406 aagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgcta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10616 aagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgcta 10557
Query: 466 atgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaatta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10556 atgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaatta 10497
Query: 526 catagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10496 catagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaa 10437
Query: 586 ctgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttctttcgaatt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10436 ctgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccgaatt 10377
Query: 646 tcttagtctttgagatttgtccacagcagacaggtaagatactgaaaaacttttccgaag 705
| |||||||||||||||||||||||||||||||||||||||||| | || | ||||
Sbjct: 10376 cttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccggaag 10317
Query: 706 aaaatccataaatggcactggaatgcgaatacacccgctcttgttagtgggcataaggta 765
||||||||||||||||||| ||||||||||| |||||| || |||| |||| ||||||
Sbjct: 10316 aaaatccataaatggcact-gaatgcgaataacaccgctc-tggtagt-ggcaaaaggta 10260
Query: 766 accccattcacaaaagttattatgtcaag 794
||| || ||||||||||||||||| ||||
Sbjct: 10259 accaca-tcacaaaagttattatgccaag 10232
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7284
Number of Sequences: 1807
Number of extensions: 7284
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)