BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB09FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1144 0.0
>3x_Contig787
Length = 1880
Score = 1144 bits (577), Expect = 0.0
Identities = 682/712 (95%), Gaps = 4/712 (0%)
Strand = Plus / Plus
Query: 86 taaaatgaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaagtcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 taaaatgaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaagtcca 889
Query: 146 gtagtagttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttattacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gtagtagttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttattacaa 949
Query: 206 ttctaatatattttttattatgcaattctttcattattatttttagctattgttaaacgt 265
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 ttctaatataactactagtatgcaattctttcattattatttttagctattgttaaacgt 1009
Query: 266 tttaggtctatatcccagaagaatactgggctgctgtaatccgtaatagattgtatctat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tttaggtctatatcccagaagaatactgggctgctgtaatccgtaatagattgtatctat 1069
Query: 326 ttattattgtttctattactattttttttggttttcctgtacttacttactctttggtgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ttattattgtttctattactattttttttggttttcctgtacttacttactctttggtgc 1129
Query: 386 aagtttgaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactgaccct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 aagtttgaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactgaccct 1189
Query: 446 gataccaccaacagtttcaatagcagctacagtgacgtcacccataatgtaagtagcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 gataccaccaacagtttcaatagcagctacagtgacgtcacccataatgtaagtagcaac 1249
Query: 506 tttccctaccgtagtccncttcttgaccagaaaacaatcgcggaacacattttcaccgtt 565
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 tttccctaccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcaccgtt 1309
Query: 566 cccaccagcgaaggtatggatgttgcgtaccgtgtacaccgggatcaaatttaaagtact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 cccaccagcgaaggtatggatgttgcgtaccgtgtacaccgggatcaaatttaaagtact 1369
Query: 626 tgcagctgcctgttatac-tggacgacacttgtag-accgaatctgtatagtacaaggtc 683
||||||||||||| |||| || ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1370 tgcagctgcctgtaatacttgaacgacacctgtagaaccgaatctgtatagtacaaggtc 1429
Query: 684 ttggataacttcattttttggtatcagttt-ttatttaacggttttaacgtatcggcatt 742
| | ||||||||| || | |||||||||| | || ||||||||||||||||||| |||
Sbjct: 1430 tcgtataacttcaattctctgtatcagtttctcatctaacggttttaacgtatcgtcatc 1489
Query: 743 ttcaaaccatttaacaaattttgtgcctttttcggaaacgtatgaacccttg 794
||||||| | |||||||| |||||||| ||| | ||||||||||||||||
Sbjct: 1490 ttcaaacgtatcaacaaattctgtgccttcttc-gtaacgtatgaacccttg 1540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8410
Number of Sequences: 1807
Number of extensions: 8410
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)