BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB10RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig515 676 0.0
3x_Contig1706 563 e-160
>3x_Contig515
Length = 1717
Score = 676 bits (341), Expect = 0.0
Identities = 390/403 (96%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 419 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 1658
Query: 479 gcttgaaatcttntgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 1598
Query: 539 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 1538
Query: 599 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 1478
Query: 659 caattgcacanaattgataaacgagattgataagcaacatggcaagcttgcccgtgttta 718
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1477 caatgcaacaaaattgataaacgagattgataagcaacatggcaagcttgccggtgttta 1418
Query: 719 ccctttgagagaactctcgttgactctttccaa-tttgatataatagacaaggggaaaac 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1417 ccctttgagagaactctcgttgactctttccaattttgatataatagacaaggggaaaac 1358
Query: 778 tgtccttgattatgtccggaattcgagccatcttcaaaatcat 820
||||||||| ||||| ||| | |||||| ||| ||||||||||
Sbjct: 1357 tgtccttga-tatgttcggtaatcgagcaatc-tcaaaatcat 1317
>3x_Contig1706
Length = 16303
Score = 563 bits (284), Expect = e-160
Identities = 284/284 (100%)
Strand = Plus / Minus
Query: 51 gcttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagatgat 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagatgat 239
Query: 111 ttccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgtgga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgtgga 179
Query: 171 aaggaattaattgatttgatggaacttcccaaagaacattctataaagttcattagagat 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aaggaattaattgatttgatggaacttcccaaagaacattctataaagttcattagagat 119
Query: 231 tcatggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgcaga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tcatggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgcaga 59
Query: 291 gatatacaaaggtctagagagtacaacattaatgaagccgatgt 334
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gatatacaaaggtctagagagtacaacattaatgaagccgatgt 15
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8263
Number of Sequences: 1807
Number of extensions: 8263
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)