BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZB11FM1.SCF screened BAC_end
         (902 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1475                                                        1342   0.0  

>3x_Contig1475 
          Length = 10676

 Score = 1342 bits (677), Expect = 0.0
 Identities = 744/764 (97%), Gaps = 2/764 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   accgcaaaggaagagcactcatcaagagtccaagtcctagtttattcgaacaaaaaattc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2696 accgcaaaggaagagcactcatcaagagtccaagtcctagtttattcgaacaaaaaattc 2755

                                                                        
Query: 146  ttagagaaaaattgttgcggtttctttttagatacggaaaagaagagatacgtccataca 205
            ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 2756 ttagagaaaaattgttgcggtttcaaattagatacggaaaagaagagatacgtccataca 2815

                                                                        
Query: 206  gctgttaaaatggttaa-gccaactcactgcccaatattgctaaaccagagtccgtaaca 264
            |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2816 gctgttaaaagggttaaagccaactcactgcccaatattgctaaaccagagtccgtaaca 2875

                                                                        
Query: 265  aaaagcttctccatcgatggtgctggatcgggaaagatatacccacagaaaaatggattc 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2876 aaaagcttctccatcgatggtgctggatcgggaaagatatacccacagaaaaatggattc 2935

                                                                        
Query: 325  agtgtggctttcactactagagagaacagtaacgcatcaggtggaagtagtatggacatg 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2936 agtgtggctttcactactagagagaacagtaacgcatcaggtggaagtagtatggacatg 2995

                                                                        
Query: 385  tctacatcgccacattatactgaagaagctgtgaaagataacacgactcctgctaaccct 444
            |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct: 2996 tctacatcgccacattatactgaagaagctgtgaaagataacacgaatactgctaaccgt 3055

                                                                        
Query: 445  gtatggaattacagtggttcttctgctccccaaccgccactgagttttaatgtcacgcca 504
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3056 gtatggaattacagtggttcttctgctcnccaaccgccactgagttttaatgtcacgcca 3115

                                                                        
Query: 505  tcattttccgtctcaaccacagttgaaagaagtgagaatgaaaaatctttcagtttgtac 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3116 tcattttccgtctcaaccacagttgaaagaagtgagaatgaaaaatctttcagtttgtac 3175

                                                                        
Query: 565  aataggaccgagatgtcaaatcacggcaacaacagtgctagcacaaatactagcaatggc 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3176 aataggaccgagatgtcaaatcacggcaacaacagtgctagcacaaatactagcaatggc 3235

                                                                        
Query: 625  tctgtttcatctcctttttcatctatccatgttcaaagttcgtcctcttcgataccactg 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3236 tctgtttcatctcctttttcatctatccatgttcaaagttcgtcctcttcgataccactg 3295

                                                                        
Query: 685  tcttccactaacaccaatggcagttctactgatttcagagaaaatagtaacggccttaat 744
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3296 tcttccactaacaccaatggcagttctactgattccagagaaaatagtaacggccttaat 3355

                                                                        
Query: 745  gaagcttcctaacttaatgttcagaatctggccactttcaactatttacagaacgcttcg 804
            |||||| |  |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 3356 gaagctcctaaacttaatgtccagaatctgtccactttcaactatttacagaacgcttcg 3415

                                                        
Query: 805  catgattttc-aattagtatatttgcccaggacagtgttgttat 847
            ||||||| || ||| ||||||||||||  |||||||||||||||
Sbjct: 3416 catgattctcaaataagtatatttgccagggacagtgttgttat 3459


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5916
Number of Sequences: 1807
Number of extensions: 5916
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)