BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZB12FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1215 0.0
>3x_Contig1687
Length = 12800
Score = 1215 bits (613), Expect = 0.0
Identities = 691/709 (97%), Gaps = 6/709 (0%)
Strand = Plus / Plus
Query: 89 gcgaatggctagcactaccagcagcacttgccaactcagataaccttgaactatcaacgt 148
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 gcgaagggctagcactaccagcagcacttgccaactcagataaccttgaactatcaacgt 4172
Query: 149 gttggaaactgttgttatttttatttttaccattagtattattgtcattattattattgt 208
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4173 gttggaaactgttgttatttttattattaccattagtattattgtcattattattattgt 4232
Query: 209 taaggttcttgct-tgattcacggtattgatattatggtcattaatattacttttgatgt 267
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233 taaggttactgctatgattcacggtattgatattatggtcattaatattacttttgatgt 4292
Query: 268 tgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgacgctgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293 tgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgacgctgc 4352
Query: 328 cttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtactgcctt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4353 cttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtactgcctt 4412
Query: 388 ctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttcttgatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4413 ctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttcttgatc 4472
Query: 448 ctctagtaacagtagccacactagactgcggcgatgactgctctcctacagccccgtcat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4473 ctctagtaacagtagccacactagactgcggcgatgactgctctcctacagccccgtcat 4532
Query: 508 acccatatttggcaggctggatacatttcacacctgctttcaaacacgcggtgcaactgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4533 acccatatttggcaggctggatacatttcacacctgctttcaaacacgcggtgcaactgg 4592
Query: 568 gaatcttgtgatcacacttttgttttcgccgttgacacaacaaacaagcacgagaacggc 627
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4593 gaatcttgtgatcacacttttgtttccgccgttgacacaacaaacaagcacgagaacggc 4652
Query: 628 ccttcttatctttcaacaactgatttgtatcctgtccagccatctcgagctccagctgaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4653 ccttcttatctttcaacaactgatttgtatcctgtccagccatctcgagctccagctgaa 4712
Query: 688 accgctgaatattctccaagctgactttcttcgga-gaccacccatcg-tacctacctt- 744
||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |||
Sbjct: 4713 accgctgaatattctccaagctgactttcttcggaggacgacccatcgttacctagcttc 4772
Query: 745 ttttgcttttgataa-ggccgat-aaagaacttttttcctttgaaagta 791
| | |||| |||||| | ||||| ||||||||||| |||||||||||||
Sbjct: 4773 tctcgcttctgataatgtccgataaaagaacttttatcctttgaaagta 4821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7511
Number of Sequences: 1807
Number of extensions: 7511
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)