BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZB12RM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1056                                                         807   0.0  

>3x_Contig1056 
          Length = 3113

 Score =  807 bits (407), Expect = 0.0
 Identities = 500/526 (95%), Gaps = 4/526 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttgncttaatctcaaaagcatatttaatatactggagtatgccccttgcttttgctta 103
            ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1293 gcttgtcttaatctcaaaagcaaagttaatatactggagtatgccccttgcttttgctta 1352

                                                                        
Query: 104  ctttcca-cattttcttagctttatctcgtgatttggattcgagagcttgatagaactct 162
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1353 ctttccaacattttcttagctttatctcgtgatttggattcgagagcttgatagaactct 1412

                                                                        
Query: 163  agttcatctccttctaatttattagcagactcctttagatgtttttcaggaagttgtttt 222
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 1413 agttcatctccttctaatttattagcagactcctttagatgtttttcaggaagttgtagt 1472

                                                                        
Query: 223  ataggtttgccatctatttgtgatgttttagttctgcgcaacataatagctctgagaagt 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1473 ataggtttgccatctatttgtgatgttttagttctgcgcaacataatagctctgagaagt 1532

                                                                        
Query: 283  acttgcacttttttcatagcacgttgccgctcgctatcattgtaatcatagggtttcttt 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 acttgcacttttttcatagcacgttgccgctcgctatcattgtaatcatagggtttcttt 1592

                                                                        
Query: 343  gtattcaaaactgcaccaatatcagaatggaacttggcctctttgttgtaagggagtatt 402
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| 
Sbjct: 1593 gtattcaaaactgcaccaatatcagaatggaacttggcctctttgttgtagggaggtatc 1652

                                                                        
Query: 403  ctcaaaaacctgattaaagagtatagctcacctatgttattctgaatgggtgtgccctga 462
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1653 ctcaaaaacctgattaaagagtatagctcacctatgttattctgaatgggtgtg-cctga 1711

                                                                        
Query: 463  taaagcccaccttgaagttcaagagattgttcaacaggctttggcctgcttggggccttt 522
            ||||||||||||  ||||  ||||||| || ||||||||||||| ||||||| | | |||
Sbjct: 1712 taaagcccacctgaaagtcgaagagatggtacaacaggctttgg-ctgcttgtgtctttt 1770

                                                          
Query: 523  tattttttatattccggcgcttcatttaaaataactttgtaaaatt 568
            ||||||||||||| | ||||||||| || ||||||| |||||||||
Sbjct: 1771 tattttttatatt-ctgcgcttcatctagaataactctgtaaaatt 1815


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8406
Number of Sequences: 1807
Number of extensions: 8406
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)