BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZB12RM1.SCF screened BAC_end (928 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1056 807 0.0 >3x_Contig1056 Length = 3113 Score = 807 bits (407), Expect = 0.0 Identities = 500/526 (95%), Gaps = 4/526 (0%) Strand = Plus / Plus Query: 44 gcttgncttaatctcaaaagcatatttaatatactggagtatgccccttgcttttgctta 103 ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 1293 gcttgtcttaatctcaaaagcaaagttaatatactggagtatgccccttgcttttgctta 1352 Query: 104 ctttcca-cattttcttagctttatctcgtgatttggattcgagagcttgatagaactct 162 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 ctttccaacattttcttagctttatctcgtgatttggattcgagagcttgatagaactct 1412 Query: 163 agttcatctccttctaatttattagcagactcctttagatgtttttcaggaagttgtttt 222 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1413 agttcatctccttctaatttattagcagactcctttagatgtttttcaggaagttgtagt 1472 Query: 223 ataggtttgccatctatttgtgatgttttagttctgcgcaacataatagctctgagaagt 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1473 ataggtttgccatctatttgtgatgttttagttctgcgcaacataatagctctgagaagt 1532 Query: 283 acttgcacttttttcatagcacgttgccgctcgctatcattgtaatcatagggtttcttt 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1533 acttgcacttttttcatagcacgttgccgctcgctatcattgtaatcatagggtttcttt 1592 Query: 343 gtattcaaaactgcaccaatatcagaatggaacttggcctctttgttgtaagggagtatt 402 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1593 gtattcaaaactgcaccaatatcagaatggaacttggcctctttgttgtagggaggtatc 1652 Query: 403 ctcaaaaacctgattaaagagtatagctcacctatgttattctgaatgggtgtgccctga 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1653 ctcaaaaacctgattaaagagtatagctcacctatgttattctgaatgggtgtg-cctga 1711 Query: 463 taaagcccaccttgaagttcaagagattgttcaacaggctttggcctgcttggggccttt 522 |||||||||||| |||| ||||||| || ||||||||||||| ||||||| | | ||| Sbjct: 1712 taaagcccacctgaaagtcgaagagatggtacaacaggctttgg-ctgcttgtgtctttt 1770 Query: 523 tattttttatattccggcgcttcatttaaaataactttgtaaaatt 568 ||||||||||||| | ||||||||| || ||||||| ||||||||| Sbjct: 1771 tattttttatatt-ctgcgcttcatctagaataactctgtaaaatt 1815 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8406 Number of Sequences: 1807 Number of extensions: 8406 Number of successful extensions: 53 Number of sequences better than 1.0e-20: 1 length of query: 928 length of database: 10,358,551 effective HSP length: 16 effective length of query: 912 effective length of database: 10,329,639 effective search space: 9420630768 effective search space used: 9420630768 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)