BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1130 0.0
>3x_Contig1776
Length = 26138
Score = 1130 bits (570), Expect = 0.0
Identities = 663/690 (96%), Gaps = 3/690 (0%)
Strand = Plus / Plus
Query: 87 tgtgtcagttaaagcatttaaaatttccacgattttttgtaatgatgaatagatttggga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9380 tgtgtcagttaaagcatttaaaatttccacgattttttgtaatgatgaatagatttggga 9439
Query: 147 atcaatctttgccaattcctccgattgtaagacaagagtatccaaggatccaatcttgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440 atcaatctttgccaattcctccgattgtaagacaagagtatccaaggatccaatcttgaa 9499
Query: 207 atctgggataggtatatctgatacgtaacttctaccagaaatcaatccagtttcaagcca 266
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9500 atctgggatagggaaatctgatacgtaacttctaccagaaatcaatccagtttcaagcca 9559
Query: 267 tgtggaaacatctctctcagggttttgtgaaggtttagcattctccggcaaggatactag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9560 tgtggaaacatctctctcagggttttgtgaaggtttagcattctccggcaaggatactag 9619
Query: 327 tataaaatctttagcagtgtacaatgcagttgtcatgttgtaatcagttttatattctgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9620 tataaaatctttagcagtgtacaatgcagttgtcatgttgtaatcagttttatattctgt 9679
Query: 387 atctttttttctgatgtttggctggtgactatcgtgatgtacaaactatcaatgaggatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9680 atctttttttctgatgtttggctggtgactatcgtgatgtacaaactatcaatgaggatg 9739
Query: 447 ttaaagtttgaccgtgtagaataaaatgagaaaacttaaaaagaagtcacgacttttttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9740 ttaaagtttgaccgtgtagaataaaatgagaaaacttaaaaagaagtcacgacttttttt 9799
Query: 507 cttaggtaaattgcagcaaacgattggagattagattacttacttaaaaggctgcttatc 566
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 9800 cttaggtaaattgcagcaaacgattggagattagattactcactaaaagggctgcttatc 9859
Query: 567 tgctctttttcctattgcattgaccctttatggttgaaaaccccctatcagttggattca 626
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct: 9860 tgctctttttcctattgcattgaccctttatggttgaaaa-cccctatcagttgtatcca 9918
Query: 627 cttctttaatttttaaacgagattaatctatttagaaagattttcaaaattagttgaatg 686
|||||| |||||| |||||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 9919 cttcttaaattttaaaacgagattaatctattaag-aagatttcgaaaattagttgaatg 9977
Query: 687 cttccctttaaaggaaatattgtatgaagggattaaagaatcaaatgttttacgacatgc 746
||||| | | |||||||||| |||||||| ||||||||| |||||||| | |||||||||
Sbjct: 9978 cttccatatgaaggaaatatcgtatgaagtgattaaagagtcaaatgtataacgacatgc 10037
Query: 747 cccatatttggcttggtgcgtttacaataa 776
|||||| |||| |||||| |||||||||
Sbjct: 10038 accatatctggc-tggtgcagttacaataa 10066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7677
Number of Sequences: 1807
Number of extensions: 7677
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)