BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC02RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig669 1249 0.0
>3x_Contig669
Length = 2015
Score = 1249 bits (630), Expect = 0.0
Identities = 692/706 (98%), Gaps = 5/706 (0%)
Strand = Plus / Plus
Query: 44 gctttgaaattctgctcccttgatttctggtcttaaagagaaatcattaatagaaaatgt 103
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 946 gctttgaaattctgctcccttgataactggtcttaaagagaaatcattaatagaaaatgt 1005
Query: 104 ttgttttggatcaacgattttgcttctcaattttttgtcttgagcttgtttccacttttc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttgttttggatcaacgattttgcttctcaattttttgtcttgagcttgtttccacttttc 1065
Query: 164 atattgttctttggtgaagaagtattccttgttgatcaattgaataccgaacttttgggt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 atattgttctttggtgaagaagtattccttgttgatcaattgaataccgaacttttgggc 1125
Query: 224 tatggccctgattaaagcatacttggaaaacctcttttcattgatatcgaaccattcaga 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 gatggccctgattaaagcatacttggaaaacctcttttcattgatatcgaaccattcaga 1185
Query: 284 agttagatcgtaacggaaacgaagttttgcttgaactctcacttcttcaattagttgttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 agttagatcgtaacggaaacgaagttttgcttgaactctcacttcttcaattagttgttc 1245
Query: 344 tctggtgtattgagcaaattctagctcattgatatcgaacaaagcatccaaattttctac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tctggtgtattgagcaaattctagctcattgatatcgaacaaagcatccaaattttctac 1305
Query: 404 agtgacactttcgttgtaagatttaccaaacaacaagttcaagaaaaatgcaactaaatg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 agtgacactttcgttgtaagatttaccaaacaacaagttcaagaaaaatgcaactaaatg 1365
Query: 464 tggcacaagagttggagatgagagttttttgctttgttgtctaaaaatatgtttaataga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 tggcacaagagttggagatgagagttttttgctttgttgtctaaaaatatgtttaataga 1425
Query: 524 acgagcgatcatctc-agttcacagaccgcgatcaacccttcaaattgatctacctcgac 582
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 acgagcgatcatctcaagttcacagaccgcgatcaacccttcaaattgatctacctcgac 1485
Query: 583 ggtacagccttcgttcctgacaggttctttcaaatctgctttgtcaagctggatttgttc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 ggtacagccttcgttcctgacaggttctttcaaatctgctttgtcaagctggatttgttc 1545
Query: 643 ttt-aatttggatggaacttcctt-ccttgctgaacgtaattgttgatctcctcttggct 700
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 1546 tttcaatttggatggaacttccttcccttgctgaacgtatttgttgatctcctcttgtct 1605
Query: 701 ttccttgatccaattttcaacttttaacaaggttaaccattttccc 746
|||||||||| | |||||||| |||||||||| |||||| ||||||
Sbjct: 1606 ttccttgatcaatttttcaac-tttaacaagg-taaccagtttccc 1649
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9847
Number of Sequences: 1807
Number of extensions: 9847
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)