BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZC03FM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1394                                                        1017   0.0  

>3x_Contig1394 
          Length = 5721

 Score = 1017 bits (513), Expect = 0.0
 Identities = 551/561 (98%), Gaps = 2/561 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 797

                                                                       
Query: 146 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 737

                                                                       
Query: 206 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 677

                                                                       
Query: 266 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 617

                                                                       
Query: 326 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 557

                                                                       
Query: 386 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 497

                                                                       
Query: 446 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 437

                                                                       
Query: 506 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtgggagcgatggttgt 565
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 436 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 377

                                                                       
Query: 566 accgtttcagtgactttttggtgctgcttatttcgttttatacgatttaagacttttttt 625
           |||||||||||||| || |||||||||| |||||||||||||||||| | ||| | ||||
Sbjct: 376 accgtttcagtgac-ttctggtgctgctaatttcgttttatacgattaatgac-tctttt 319

                                
Query: 626 taaaggcattggcgggatgtt 646
            | ||||||||||||||||||
Sbjct: 318 cagaggcattggcgggatgtt 298


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,123
Number of Sequences: 1807
Number of extensions: 11123
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)