BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZC03RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1602                                                        1283   0.0  

>3x_Contig1602 
          Length = 12694

 Score = 1283 bits (647), Expect = 0.0
 Identities = 711/727 (97%), Gaps = 4/727 (0%)
 Strand = Plus / Minus

                                                                        
Query: 46   gctttcactaatgaacaaatggttcgtaacggcgtcggtcaaagaactttccgattcgtg 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6325 gctttcactaatgaacaaatggttcgtaacggcgtcggtcaaagaactttccgattcgtg 6266

                                                                        
Query: 106  gaagaattcacgaaggataccctcctaaaggatgacgagttaagaaacaccgttaagatt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6265 gaagaattcacgaaggataccctcctaaaggatgacgagttaagaaacaccgttaagatt 6206

                                                                        
Query: 166  catattctaaaaagtgagaagactaccgtggagctaagagatattaatatcgcatttttt 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 6205 catattctaaaaagtgagaagactaccgtggagctaagagatattaatatcgcacaacag 6146

                                                                        
Query: 226  aatcctaatgcaaaagatgcaggtggcttatttggtatagctatgaaggaattagaaaga 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6145 aatcctaatgcaaaagatgcaggtggcttatttggtatagctatgaaggaattagaaaga 6086

                                                                        
Query: 286  tatggtgcaccatttaatgacaactataacacttctcaagctgctgtcatgttcatggat 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6085 tatggtgcaccatttaatgacaactataacacttctcaagctgctgtcatgttcatggat 6026

                                                                        
Query: 346  agtcattgggacaaaaaactgaaattgattactgcgcatgccgctctcggtggtggtaca 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6025 agtcattgggacaaaaaactgaaattgattactgcgcatgccgctctcggtggtggtaca 5966

                                                                        
Query: 406  aataagatcaaacttgcaattttcggttcccatggtctgtattcttggcctacttgcttt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5965 aataagatcaaacttgcaattttcggttcccatggtctgtattcttggcctacttgcttt 5906

                                                                        
Query: 466  caagacattgttccttactttttagatgataccagagcaagcacctctgaagtagccaat 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905 caagacattgttccttactttttagatgataccagagcaagcacctctgaagtagccaat 5846

                                                                        
Query: 526  gattgtaaccagtgcggtacccactgggaatgtctcgcaattacactaggtgcattcatg 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5845 gattgtaaccagtgcggtacccactgggaatgtctcgcaattacactaggtgcattcatg 5786

                                                                        
Query: 586  catgaaataggacacttgctaggctgtccacatcaagaaaattgggtaatgttaagagat 645
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5785 catgaaataggacacttgctaggctgtccacatcaagaaaatggggtaatgttaagagat 5726

                                                                        
Query: 646  tacatgactttgaacagatcgtttcttaccaaagaagcttacagtttaagaactaattca 705
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5725 tacatgactttgaacagatcgttccttaccaaagaagcttacagtttaagaactaattca 5666

                                                                        
Query: 706  tatgggtgcccaatcttcaatattttcctaacttcgaatgtacatggccacagattggga 765
            ||| |||||||||||| ||||| | ||||||  |||||||||||||| |||||||| |||
Sbjct: 5665 tat-ggtgcccaatctccaata-tatcctaaactcgaatgtacatgg-cacagatt-gga 5610

                   
Query: 766  tattctt 772
            |||||||
Sbjct: 5609 tattctt 5603


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6706
Number of Sequences: 1807
Number of extensions: 6706
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)