BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1259 0.0
>3x_Contig1676
Length = 15800
Score = 1259 bits (635), Expect = 0.0
Identities = 766/803 (95%), Gaps = 5/803 (0%)
Strand = Plus / Plus
Query: 87 gacagaggaataatttctgattcgtgcttctgcttctactgacttgcaaaccagtaaaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14175 gacagaggaataatttctgattcgtgcttctgcttctactgacttgcaaaccagtaaaca 14234
Query: 147 agttactgcattaatcagtaataatctgcgtatagcgaaacttgtaaccagtttcctcgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14235 agttactgcattaatcagtaataatctgcgtatagcgaaacttgtaaccagtttcctcgt 14294
Query: 207 aacaaggttagcagaagaatttgcaagaggatcaagttgataaagacgtatatttaggtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295 aacaaggttagcagaagaatttgcaagaggatcaagttgataaagacgtatatttaggtc 14354
Query: 267 tctgcacgttttcaaacttttaagcgagaatcaaacgattacaaaaaggaaaatattgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14355 tctgcacgttttcaaacttttaagcgagaatcaaacgattacaaaaaggaaaatattgat 14414
Query: 327 acaagtaataataaactgcaatgacacaatctttgccattgttgaacggtacggaagcgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14415 acaagtaataataaactgcaatgacacaatctttgccattgttgaacggtacggaagcgt 14474
Query: 387 acaaattagttacgactcaagggttgtatgataagacagtcaagttttacgaaaagtatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475 acaaattagttacgactcaagggttgtatgataagacagtcaagttttacgaaaagtatt 14534
Query: 447 tgcaattagttcatgacaagcgagttggcacattgacaaattctttaatcactctaaagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14535 tgcaattagttcatgacaagcgagttggcacattgacaaattctttaatcactctaaagc 14594
Query: 507 tagttgttgataacagcttcaagccattggatgttgtttacgataaagattggagggcca 566
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 14595 tagttgttgataacagcttcaagccattggatgttgttaacgataaagattggagggcca 14654
Query: 567 ttgtgtcatcagcattggtttttttcatgtacaaatatccaacatttcagagatttggct 626
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14655 ttgtgtcatcagcattgg-ttttttcatgtacaaatatccaacatttcagagatttggct 14713
Query: 627 gctggggaaacgattcaggccttattct-acgaaacccacccaattgaaatatatttgaa 685
||||| ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||
Sbjct: 14714 gctggtgaaacgattcaggcc-tatcctaacgaaaccaacccaattgaaatatatttgaa 14772
Query: 686 ggatccaaacggatatttctttggtattactgaaacgaaaaatgctatttttatc-aacc 744
|||||||||||||||| || ||||||| |||||||||||||||||||||| |||| ||||
Sbjct: 14773 ggatccaaacggatatatcattggtatcactgaaacgaaaaatgctatttctatcaaacc 14832
Query: 745 tacgctgtctaagcaattggttgaggcctttttgat-ttcttaagaactttaagaataaa 803
||||||| ||||||||| |||||||||| |||||| | || |||| ||| ||||||| |
Sbjct: 14833 tacgctgcctaagcaatctgttgaggcctctttgatctcctcaagatcttcaagaataga 14892
Query: 804 ccttggtttttttgggggttccactgacaggttgtttccagggatttcaaaaactgcgaa 863
| ||| || || ||| | |||||||||||| | || ||||| |||| |||| ||||||||
Sbjct: 14893 cattgcttcttctggtgtttccactgacagctcgtatccagcgattccaaagactgcgaa 14952
Query: 864 agcccaaaagtccttccccgtta 886
||| ||||||||| || ||||||
Sbjct: 14953 agcgcaaaagtccatcgccgtta 14975
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7137
Number of Sequences: 1807
Number of extensions: 7137
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)