BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1310 0.0
>3x_Contig1630
Length = 14771
Score = 1310 bits (661), Expect = 0.0
Identities = 737/757 (97%), Gaps = 4/757 (0%)
Strand = Plus / Plus
Query: 46 ctagatccgtctacatataaatccactgcgtgggatgcagcaaccaaaattcattacgat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9442 ctagatccgtctacatataaatccactgcgtgggatgcagcaaccaaaattcattacgat 9501
Query: 106 agtaaaatggttaaacaattcgatagctacgaaggtgaattagatgcacgtctgcttaaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9502 agtaaaatggttaaacaattcgatagctacgaaggtgaattagatgcacgtctgcttaaa 9561
Query: 166 aatattacctccaatttctcatctgaaacgttccctattcagaccattctattcgataaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9562 aatattacctccaatttctcatctgaaacgttccctattcagaccattctattcgataaa 9621
Query: 226 gtgctcccgcttctaaactcatcttttaaagcaaacagaaaacttttcacaagacgagtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9622 gtgctcccgcttctaaactcatcttttaaagcaaacagaaaacttttcacaagacgagtt 9681
Query: 286 ggtgatatattagtaaacgcatcaactggttccggtaagaccttagcatattctgtccct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9682 ggtgatatattagtaaacgcatcaactggttccggtaagaccttagcatattctgtccct 9741
Query: 346 ttggttcaaattttatgatctagaacagtgaataaagttagggcaataattttggttcct 405
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9742 ttggttcaaattttgagatctagaacagtgaataaagttagggcaataattttggttcct 9801
Query: 406 actaaaattttaattcatcaagtctacgattgtctctctaaactaagtcaagggaccagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9802 actaaaattttaattcatcaagtctacgattgtctctctaaactaagtcaagggaccagt 9861
Query: 466 ctcaatgtatcaatgtcgaaactcgagaactccttgaaagaagaacacaacaaatttttg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9862 ctcaatgtatcaatgtcgaaactcgagaactccttgaaagaagaacacaacaaatttttg 9921
Query: 526 tataactctccagacatttctatcatcactccgggcagactggtcgatcacttgcagatg 585
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9922 tataactctccagacattctaatcatcactccgggcagactggtcgatcacttgcagatg 9981
Query: 586 gaatcatttgacctaaaaactttgaagttcttagtccttgatgaagcagaccgactatta 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9982 gaatcatttgacctaaaaactttgaagttcttagtccttgatgaagcagaccgactatta 10041
Query: 646 aatcagtcattccaaaattggaacccaagtgctttttcacccatttgacaaacgattagg 705
||||||||||||||||||||||| |||||||||||| || ||||||||||||||| || |
Sbjct: 10042 aatcagtcattccaaaattggaa-ccaagtgcttttcca-ccatttgacaaacga-taag 10098
Query: 706 caggataaacgtccaggaaacggtatcaaaaagggcttttctgctacctttgactacgaa 765
|||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||
Sbjct: 10099 caggataaacgtccaggaaacgtaatcaaaatggtcttttctgcta-ctttgactacgaa 10157
Query: 766 tgcagaaaaagtgtacaatttggattttcacaacccc 802
||||||||| ||||||||||| || | |||||||||
Sbjct: 10158 tgcagaaaagttgtacaatttgtatctccacaacccc 10194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7950
Number of Sequences: 1807
Number of extensions: 7950
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)