BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC05FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1379 234 3e-61
>3x_Contig1379
Length = 6767
Score = 234 bits (118), Expect = 3e-61
Identities = 125/126 (99%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 95 taaagattcgtaacttcaaaaactacgtcgagttatacttgaaatcactagagaagatca 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 taaagattcgtaacttcaaaaactacgtcgagttatacttgaaatcactagagaagatca 71
Query: 155 aattaaatagacttagagagtcgagtaccccagatgaaccaatgcaagagcctactaaaa 214
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 70 aattaaatagacttagagagtcgagt-ccccagatgaaccaatgcaagagcctactaaaa 12
Query: 215 tcccaa 220
||||||
Sbjct: 11 tcccaa 6
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8038
Number of Sequences: 1807
Number of extensions: 8038
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)