BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC05RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig357 965 0.0
>3x_Contig357
Length = 1454
Score = 965 bits (487), Expect = 0.0
Identities = 497/499 (99%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 40 atataacctgagtagaagagaaccgtttagtatttttgatttgaaaatagaatcatcatc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atataacctgagtagaagagaaccgtttagtatttttgatttgaaaatagaatcatcatc 439
Query: 100 aaactgataagtggagacaaaatcttcggtgaaatccttgtaggattgacttgaatgcat 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaactgataagtggagacaaaatcttcggtgaaatccttgtaggattgacttgaatgcat 379
Query: 160 gagttttgagagaaattcactattcaagcgagccaaaaacgaaggaattgccttctttgg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagttttgagagaaattcactattcaagcgagccaaaaacgaaggaattgccttctttgg 319
Query: 220 tgtttcatattgggataaaaccattataaaatcgtcaaaatactgttcccaagtagaatt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtttcatattgggataaaaccattataaaatcgtcaaaatactgttcccaagtagaatt 259
Query: 280 cgctaagaatgcagagtttgaaaaatctatcatcacatccattggaattttgaagaaagc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgctaagaatgcagagtttgaaaaatctatcatcacatccattggaattttgaagaaagc 199
Query: 340 ctcagagactaacgtgggtaatacgtcgataaaagtattaatctctttggtaaggttcaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ctcagagactaacgtgggtaatacgtcgataaaagtattaatctctttggtaaggttcaa 139
Query: 400 gttattggttttgatcaagttatcgtagaaaatgaagccataacaagaaggaagatcgtc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gttattggttttgatcaagttatcgtagaaaatgaagccataacaagaaggaagatcgtc 79
Query: 460 aggattttccaactcctccaaagatttcataacttcaacgctcaacatatgcatagttgt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 aggattttccaactcctccaaagatttcataacttcaacgctcaacatatgcatagttgt 19
Query: 520 gatatcactggacaaaatg 538
|||||||| |||||||||
Sbjct: 18 -atatcactagacaaaatg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8240
Number of Sequences: 1807
Number of extensions: 8240
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)