BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC06FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1053 0.0
>3x_Contig1354
Length = 7778
Score = 1053 bits (531), Expect = 0.0
Identities = 634/663 (95%), Gaps = 4/663 (0%)
Strand = Plus / Plus
Query: 87 tttgcgggtttttgccaccgttccatgcacagggttttaagcttgcttgagtttttccga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654 tttgcgggtttttgccaccgttccatgcacagggttttaagcttgcttgagtttttccga 6713
Query: 147 acaaagggttgtaaaagcagagaagttggaaacacagtcgaagatgtagggaaacagcgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6714 acaaagggttgtaaaagcagagaagttggaaacacagtcgaagatgtagggaaacagcgt 6773
Query: 207 aacatcattggtcttttaccggttcctgtgggaacatggtgcggctgcgtgtttgccaca 266
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6774 aacatcattggtcgaagaccggttcctgtgggaacatggtgcggctgcgtgtttgccaca 6833
Query: 267 aaaacgaaaaaagaaccaaaaaaaaacgttaaacgctaatatcgttcgtttggtaaaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6834 aaaacgaaaaaagaaccaaaaaaaaacgttaaacgctaatatcgttcgtttggtaaaaaa 6893
Query: 327 aaggaatcgccgaatcttgaattccaggatttctatgaaatcctggaattctttactgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6894 aaggaatcgccgaatcttgaattccaggatttctatgaaatcctggaattctttactgct 6953
Query: 387 ttcatactcgaatttcgtctggttcgttgtttttgatttttcattattattcatagagat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6954 ttcatactcgaatttcgtctggttcgttgtttttgatttttcattattattcatagagat 7013
Query: 447 tcagtatagtgcaaactgagttcagcatgtagagaaagaaggtcgacatccgatatgtca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7014 tcagtatagtgcaaactgagttcagcatgtagagaaagaaggtcgacatccgatatgtca 7073
Query: 507 ggttatgcaagtgttaatgaaacgcctcattttgaagacgaggtagatggccatttcgga 566
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7074 ggttatgcaagtgttaatgaaacgcctcatcttgaagacgaggtagatggccatttcgga 7133
Query: 567 tggctgga-gcgattcgggtgttgtttggtgtcctgttacccttac-acttactgtgaaa 624
|||||||| |||||||||||||||||||||||||||||| ||| || ||| |||||||||
Sbjct: 7134 tggctggatgcgattcgggtgttgtttggtgtcctgttagcctcacaactaactgtgaaa 7193
Query: 625 tgtgtgtcgggatactgggaggcttcaacttttgattggggggtcccaagttggcacagc 684
|||||||||||||||| || ||||||||||||||||| || |||||| ||||||||||||
Sbjct: 7194 tgtgtgtcgggatact-ggtggcttcaacttttgatt-ggtggtcccgagttggcacagc 7251
Query: 685 gggttttgggtttgggtttttggtctacacccaatttttcttttccgtattactttactt 744
|||| | ||||| || | |||||||||| ||||| | || | |||||| |||| ||||
Sbjct: 7252 gggtatagggttaggctaactggtctacacacaattatactatcccgtataacttcactt 7311
Query: 745 tac 747
|||
Sbjct: 7312 tac 7314
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7659
Number of Sequences: 1807
Number of extensions: 7659
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)