BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC06RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 916 0.0
>3x_Contig1610
Length = 13981
Score = 916 bits (462), Expect = 0.0
Identities = 655/701 (93%), Gaps = 15/701 (2%)
Strand = Plus / Minus
Query: 48 ctcttgattttgtgcattatgtatttatatgttttttct-actgaaaacaacttcctcca 106
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2449 ctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttcctcca 2390
Query: 107 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 2330
Query: 167 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctatattcgtctatt 226
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 2329 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 2270
Query: 227 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 2210
Query: 287 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 2150
Query: 347 ctcgtaccttcgatgagccagttgggtttcaatatctagtcacgtgtgtttacttaaact 406
|||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2149 ctcgaaacatcgatgagccagttgggtttcaatatctagtcacgtgtgtgtacttaaact 2090
Query: 407 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 2030
Query: 467 tttttctctgaacccag-attacatattttaaaatc-atacaaatttaaat-accacttg 523
|||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct: 2029 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 1970
Query: 524 agccgttgattac-accttgattc-aactgatctttgtt-ctttatcattaaaattttc- 579
||||||||| || |||||||| | ||||||||| |||| ||||||||| ||||| |||
Sbjct: 1969 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 1910
Query: 580 gatacg-tcgtaagataactttatttcgataaaaagga-tgtgtgacactaattgaaact 637
|||||| ||||| ||||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct: 1909 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 1850
Query: 638 ctcttttttttttttacccttttgttattgactgagcctttcaattaatttattcttttg 697
||| ||||||||||||| | ||||||||||||||||| ||||| | |||| |||||||
Sbjct: 1849 ctc-tttttttttttacgcatttgttattgactgagcttttca--ttatttcatcttttg 1793
Query: 698 agtcctgggttaagaagggaccaccccgctggaaggcaaaa 738
||| || ||||||||||| ||||| | ||| ||||||||||
Sbjct: 1792 agtact-ggttaagaaggtaccacgcagct-gaaggcaaaa 1754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,421
Number of Sequences: 1807
Number of extensions: 14421
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)