BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC07FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 890 0.0
>3x_Contig1588
Length = 14692
Score = 890 bits (449), Expect = 0.0
Identities = 557/589 (94%), Gaps = 3/589 (0%)
Strand = Plus / Minus
Query: 233 cttcttcaccaggtaagaggaatagtagagattcaccttcgcaaccagcacgagcagtac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14589 cttcttcaccaggtaagaggaatagtagagattcaccttcgcaaccagcacgagcagtac 14530
Query: 293 gcccgattctgtgtaaatggtcttctactgcaaacggtggatccatttctataacagtac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14529 gcccgattctgtgtaaatggtcttctactgcaaacggtggatccatttctataacagtac 14470
Query: 353 tcacatggggtaaatcaagacctctggatgcaacatcggtacaaaataagatcagatgct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 tcacatggggtaaatcaagacctctggatgcaacatcggtacaaaataagatcagatgct 14410
Query: 413 tacccttggtggcatcgttattcgtggcgaagtgttttaaggttgcggttcttgtttgtt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14409 tacccttggtggcatcgttattcgtggcgaagtgttttaaggttgcggttcttgtttgtt 14350
Query: 473 gcgataaggacccatgcaacttgttacatatgacgtttggatcgtccgtgtcgttgaaac 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14349 gcgataaggacccatgcaacttgtaacatatgacgtttggatcgtccgtgtcgttgaaac 14290
Query: 533 atggaagtatgctgttcccctttgtgagaagccttgcggtatcttcaacgagacctttat 592
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 14289 atggaagtatgctgttcccctttgtgagaagccttgcggtatctccaacgagacctctat 14230
Query: 593 gatttccatcatgcgaagaaaacactttgtagtggaaatttacactatcagaacaagata 652
|||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 14229 gattcccatcatgcgatgaaaacacttcgtagtggaaatctacactatcagaacaagata 14170
Query: 653 aaaacacaatggttcttggtacgtctgattttgaaccttttttataatgcttttgaatta 712
|||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||
Sbjct: 14169 aaaacacaatggttcttgttacgtctgattttgatccttctttataatgcttttgagtta 14110
Query: 713 tagtgggcaaagatcccgttaaataaacaagccttaactttggttggcccttttaaaatc 772
|||| | ||||||||||| || | ||| ||||||| |||||| |||| || | | ||||
Sbjct: 14109 tagttgtcaaagatcccgctagagtaactagccttagctttgg-tggcactatgacaatc 14051
Query: 773 ttttgaaagtattgatccgggtctgttagtagtttccggtttgtttttg 821
||||||| ||||||| || ||| ||||||||||| |||||||||||
Sbjct: 14050 ttttgaagtaattgatctggtactg-tagtagtttcc-gtttgtttttg 14004
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6955
Number of Sequences: 1807
Number of extensions: 6955
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)