BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC07RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 983 0.0
>3x_Contig1794
Length = 36744
Score = 983 bits (496), Expect = 0.0
Identities = 640/676 (94%), Gaps = 9/676 (1%)
Strand = Plus / Plus
Query: 44 gcttcgccatttttgtagctcttttctcttcttcaaagatctccatttcgttagcttcc- 102
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 29676 gcttcgccatttttgtagctctttcctcttcttcaaagatctccatttcgttagcttcca 29735
Query: 103 tatcgtcgtcaagatctgaatcaaagtatttccttttactacctttgttgaagatagacc 162
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29736 tatcgtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagacc 29795
Query: 163 aaatttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29796 aaatttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcat 29855
Query: 223 catcttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29856 catcttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgt 29915
Query: 283 gtcttgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29916 gtcttgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttg 29975
Query: 343 gttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29976 gttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtt 30035
Query: 403 tagcatctttcgttgccgcctttggtttagcggccttatcaaatccgagtttcttcggga 462
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 30036 tagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcggga 30095
Query: 463 gcggcttcttgtctttctttgggccttccctagacttctgctctgctcgctttatttatt 522
||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||| |
Sbjct: 30096 gcggcttcttgtcttcctttggtccttccctagacttctgctctgctcgcttca-ttaat 30154
Query: 523 tcatcaaaccgatggttctttgattggcttcctttttcggtaccacgacaggatactttc 582
|||||||| |||| ||| ||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 30155 tcatcaaa-cgatagtttcttgattggc-tcccttttcggtaccacgacaggatactttc 30212
Query: 583 cgcttgtggtattg-ccccaggtttttttttat-aattggagccttatccttcgcgaaga 640
|||||||||||||| | ||||||||||| |||| ||||||||||| ||| | |||| ||
Sbjct: 30213 cgcttgtggtattgacaccaggttttttcttataaattggagcctcatcttcggcgatga 30272
Query: 641 cgctttatgcctgg-cttaccaacaggttttatcgatggggatgat-taccttg-tttaa 697
|||||||||||||| |||| || ||||||| |||||| ||||||| ||||||| || ||
Sbjct: 30273 cgctttatgcctggccttagcagcaggtttagtcgatgtggatgatataccttgcttcaa 30332
Query: 698 actacgcgctttcttt 713
|||||||||| ||||
Sbjct: 30333 cctacgcgcttccttt 30348
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9280
Number of Sequences: 1807
Number of extensions: 9280
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)