BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZC08FM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1628                                                        1356   0.0  

>3x_Contig1628 
          Length = 12927

 Score = 1356 bits (684), Expect = 0.0
 Identities = 802/833 (96%), Gaps = 10/833 (1%)
 Strand = Plus / Plus

                                                                        
Query: 86   aaccgctggaaacagacagctgaggtccaagatcagattattgcagaaacagctaaggaa 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6999 aaccgctggaaacagacagctgaggtccaagatcagattattgcagaaacagctaaggaa 7058

                                                                        
Query: 146  ttcgaaatctgaaaaaatctcccaacttaataaccaattgggctcctatgatagtacagg 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7059 ttcgaaatctgaaaaaatctcccaacttaataaccaattgggctcctatgatagtacagg 7118

                                                                        
Query: 206  acacaacaaacctgtttatagacccataggacgtgcaaaatacatgaaaagacaaaaaga 265
            ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7119 acacaacaaacctgcaaatagacccataggacgtgcaaaatacatgaaaagacaaaaaga 7178

                                                                        
Query: 266  ctttgtatggctaccaactcatttgtggaatgcgaaaagatctcatatgttcaagagatg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7179 ctttgtatggctaccaactcatttgtggaatgcgaaaagatctcatatgttcaagagatg 7238

                                                                        
Query: 326  ggggttccatctaccgtggtctcccactcagaagaatttcaggctcactcatagattaac 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239 ggggttccatctaccgtggtctcccactcagaagaatttcaggctcactcatagattaac 7298

                                                                        
Query: 386  agccaatgttgcaagttctaatggagcaatggcttgtgacactagctatatgggtgatat 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 agccaatgttgcaagttctaatggagcaatggcttgtgacactagctatatgggtgatat 7358

                                                                        
Query: 446  gatagtttcctgttctgatcacgagaaattgaaggatgtaatcaaacaactgactaatgg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 gatagtttcctgttctgatcacgagaaattgaaggatgtaatcaaacaactgactaatgg 7418

                                                                        
Query: 506  acgggcttgtttaccaaagtaccttaaaaggcaactgtttaagggtttattgtattttgg 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 acgggcttgtttaccaaagtaccttaaaaggcaactgtttaagggtttattgtattttgg 7478

                                                                        
Query: 566  gaccgaatgtgttggcccatgtaatgtcctttggtttaatccaaaatgtgtactaatccg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7479 gaccgaatgtgttggcccatgtaatgtcctttggtttaatccaaaatgtgtactaatccg 7538

                                                                        
Query: 626  tctt-acccctca-tatatcttcaggttttcagtaaactcgtttcctgtttgaatctgaa 683
            |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7539 tcttcacccctcaatatatcttcaggttttcagtaaactcgtttcctgtttgaatctgaa 7598

                                                                        
Query: 684  agatttttctgttcaagattgtcaattctcccttggttccattactatatctggtgggaa 743
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7599 agaattttctgttcaagattgtcaattctcccttggttccattactatatctggtgggaa 7658

                                                                        
Query: 744  atctctgtatgctctgtcgcagattttgagaattacaagcgattccccattttacaagca 803
            |||||||||||||||||||||||| ||||||  ||||||||||||| ||| |||||||||
Sbjct: 7659 atctctgtatgctctgtcgcagatattgagatctacaagcgattccacatcttacaagca 7718

                                                                        
Query: 804  atttcaagaaaatatcacgtattaaagaacctcaaccgtttttgccagaaaaaaaaaggt 863
            ||| || ||||||||||||||| | |||  ||| |||||||| ||||||||| | || ||
Sbjct: 7719 attcca-gaaaatatcacgtataacaga--ctccaccgtttt-gccagaaaagacaatgt 7774

                                                                 
Query: 864  ttgccttttgaaaccatggaacccccaatatttttgtaaaatccaaaaccgtg 916
            |||||||| ||| | ||||| |||   | |||||||| |||||||||||||||
Sbjct: 7775 ttgccttt-gaagcaatggacccc---agatttttgtcaaatccaaaaccgtg 7823


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7089
Number of Sequences: 1807
Number of extensions: 7089
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)