BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC08RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1723 1334 0.0
>3x_Contig1723
Length = 15177
Score = 1334 bits (673), Expect = 0.0
Identities = 787/813 (96%), Gaps = 9/813 (1%)
Strand = Plus / Minus
Query: 56 caactgagatgttagaacgcaacccataccaacgggngcccgcaccaacaatggcgactg 115
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4118 caactgagatgttagaacgcaacccataccaacggg-gcccgcaccaacaatggcgactg 4060
Query: 116 tgtcacccggcttgacgttacccatttgcacaccaatctcatgggcagtaggtagagcat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4059 tgtcacccggcttgacgttacccatttgcacaccaatctcatgggcagtaggtagagcat 4000
Query: 176 ccgaaagcattaccgctgcttcatcggacaaattctctggcacgctgtacaaagaagtat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3999 ccgaaagcattaccgctgcttcatcggacaaattctctggcacgctgtacaaagaagtat 3940
Query: 236 cagcgaatggagtgcggacatattcagcttgagtaccatcaatcatataacctaaaatcc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3939 cagcgaatggagtgcggacatattcagcttgagtaccatcaatcatataacctaaaatcc 3880
Query: 296 atccgcctccattcgtacaatgcgaatacaaagattttgcacaattttcacaggtcccac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3879 atccgcctccattcgtacaatgcgaatacaaagattttgcacaattttcacaggtcccac 3820
Query: 356 atctgctaatacaggacactataaccctatctccttttttgaaattatgaactgcatcac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3819 atctgctaatacaggacactataaccctatctccttttttgaaattatgaactgcatcac 3760
Query: 416 cgacctcgtcgataattccaattccctcatgacctaaaatgcgtccattaaaactacctt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3759 cgacctcgtcgataattccaattccctcatgacctaaaatgcgtccattaaaactacctt 3700
Query: 476 ccttcgtttgagcagtttgttcaatttcggggttcttacctttccaaatccccaaatcgg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3699 ccttcgtttgagcagtttgttcaatttcggggttcttacctttccaaatccccaaatcgg 3640
Query: 536 taccgcagattgaagtgtgcgtcattttgataatggcatccgttgaagaaagaatctggg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3639 taccgcagattgaagtgtgcgtcattttgataatggcatccgttgaagaaagaatct-gg 3581
Query: 596 ggttgttctctatcctcaaatttgatgtcatttgcaccataataaaccatagccttcatg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3580 ggttgttctctatcctcaaatttgatgtcatttgcaccataataaaccatagccttcatg 3521
Query: 656 atattggttctgggtagatttttcttctaatacttgaacttaataaccgtctacttggga 715
||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3520 atattgg-tctggttaga-ttttcttctaatacttgaacttaatagccgtctacttggga 3463
Query: 716 atattcctttgttgacagctttacgaaacattttagtggtgagaattcattttcttaact 775
|||||||| || ||||||||||||||||||||| ||| ||||||||||| ||||| ||||
Sbjct: 3462 atattcctctgctgacagctttacgaaacatttcagt-gtgagaattcaatttctaaact 3404
Query: 776 atcaaacacaatactttccttttttaacaaaggaggggtatttgtatcttttccaaataa 835
| | |||||||||| |||| |||||||||| || |||| |||| | ||||||||| |
Sbjct: 3403 a-cgaacacaatacattcc-cttttaacaaaagatgggttattgt-tactttccaaatta 3347
Query: 836 atcatacccttaaataaaaaaacttcgggatgc 868
||||||||||||||| |||||||||||||||||
Sbjct: 3346 atcatacccttaaat-aaaaaacttcgggatgc 3315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6693
Number of Sequences: 1807
Number of extensions: 6693
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)