BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC09FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1370 0.0
>3x_Contig1680
Length = 12597
Score = 1370 bits (691), Expect = 0.0
Identities = 742/755 (98%), Gaps = 3/755 (0%)
Strand = Plus / Minus
Query: 85 caaaagaacaaactctttcctctttgactacaaggggggtagattacaaagaattacagc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10772 caaaagaacaaactctttcctctttgactacaaggggggtagattacaaagaattacagc 10713
Query: 145 atgtattgtccaatcacttagcattctctaacattcaacaagtgccactctttcaattgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10712 atgtattgtccaatcacttagcattctctaacattcaacaagtgccactctttcaattgc 10653
Query: 205 aggatgttaactctgttgtctcgaagttaagccgcacagaactgcgcgctattttgaatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10652 aggatgttaactctgttgtctcgaagttaagccgcacagaactgcgcgctattttgaatg 10593
Query: 265 acgaacaatgtatcggagtaatttaccgtacaggaaaagatgccgcaggaaagccactgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10592 acgaacaatgtatcggagtaatttaccgtacaggaaaagatgccgcaggaaagccactgg 10533
Query: 325 atgaagaatactactatgatgcagaaaatgatcctgacgatgacagaagacagctggtag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10532 atgaagaatactactatgatgcagaaaatgatcctgacgatgacagaagacagctggtag 10473
Query: 385 catcactcaagggtggcagatctggtttaagatcatgcaggagagtgcataaacagtatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10472 catcactcaagggtggcagatctggtttaagatcatgcaggagagtgcataaacagtatt 10413
Query: 445 tctggaagaaaccaactaaataatctaaaaattctgctcgacttgctttttaacacaagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10412 tctggaagaaaccaactaaataatctaaaaattctgctcgacttgctttttaacacaagg 10353
Query: 505 cgtcgaagaaacaaatatatacataggcaataaatgtaatagaaaaaaaaggttcatcgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10352 cgtcgaagaaacaaatatatacataggcaataaatgtaatagaaaaaaaaggttcatcgt 10293
Query: 565 attttataggtaaaagtccactaaaattacaacagcttgcgtaaactgtttagttagaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10292 attttataggtaaaagtccactaaaattacaacagcttgcgtaaactgtttagttagaaa 10233
Query: 625 taaaagtacaaacagagttatttccaaataggttaccatcaattggtatttattcggcgg 684
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10232 taaaagtacaacaagagttatttccaaataggttaccatcaattggtatttattcggcgg 10173
Query: 685 cactctct-aaaagttgttcacctcgtctgtatctatatcttcaggaacttcattagatt 743
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10172 cactctctaaaaagttgttcacctcgtctgtatctatatcttcaggatcttcattagata 10113
Query: 744 tagcttgcaaaagaacgtcaagcattgagtcaaccttctccttatttatctttcaagcag 803
|||||||||||||| ||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 10112 tagcttgcaaaagaccgtcaagcattgagtcaaccttctcttcatctatc-ttcaagcag 10054
Query: 804 agagacaagacttttctggaattagaattctaaat 838
|||||||||||||||||| | |||| |||||||||
Sbjct: 10053 agagacaagacttttctgaatttag-attctaaat 10020
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6959
Number of Sequences: 1807
Number of extensions: 6959
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)